Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0143 ATGGACAGTAATAAGGACGAGGCCGGAAAATGTATTAGGATTGCGGAGCAAGCAATTGCATCAGGTGATAAAGAGCGTGCCCTAAAATTTCTTAAAATCGCACTACGTCTTAATGATAGTTTACAAGTTGATGAACTCTTGGCTGGTTGTGAGAAGCTTGATTCAGATTCACCTACTTTTATCGATAAAATCCGTCCCAATGAAAAATTGAACGAGAGTGCTGAGGAAAAATTTAGTGCGGGTTTGAATGGGGAACATAACTATACTGAACAGCATGTTCAGTTGATTGGGCACATTAACAGGAACAAAGATTATTACGGAATTCTCGGTGTTGAGAAGAACTGCTCAGTTGATGAGATTAAGAAGGCTTATAGGAAATTGTCATTGAAAGTTCACCCTGATAAGAACAAGACTCCTGGTTCTGAAGAGGCCTTCAAGAAAGTGGTTAAGGCTTTCAAGTGTTTGAGTGATGTTGATTCAAGGAGGCAGTATGACCATACAGGTTTAATCGAGGAGGATGAGTATAACCACCAGTACAATGTTAGACGGAGGAGGAGGAGAACTGGACATTATTCATATGATGCTGATTTTGACGCGGATGAGTTATTTAGGGCATTCTTTGGCCAGTCAGACATGTTTCCGGCAGGGCGTGCTTATAGAACTGGGGGAATGGGGAGTCAAAGGAGGGAAGAATCTACTGGAGGATCACCCAATTTTTTCATTCTGCTCCAATTATTACCGTTCTTGTTGATGTTCTTACTTGCTTATCTGCACTTTTCGGAACCCGACTATTCTTTGCATCAGACATACTCCTATTCGGTTCCCATGATGTCTGAAAAACATGGTGTAGAATTTTATGTCAAATCGTCGACATTTGATTCAAAGTATCCTCTTGGGAGTTCTGCTCGTTCTGATATAGAGAACAATGTGATCAGAGATTACAAGAACTTACTTGGACGCTATTGTCATGCAGAGCTTCAAAGGCGCACGTGGCGTAGAAATCTGCCCACACCTCACTGTGATAAGCTACGTAATCTTGGGTTGGCGTAA 1050 41.62 MDSNKDEAGKCIRIAEQAIASGDKERALKFLKIALRLNDSLQVDELLAGCEKLDSDSPTFIDKIRPNEKLNESAEEKFSAGLNGEHNYTEQHVQLIGHINRNKDYYGILGVEKNCSVDEIKKAYRKLSLKVHPDKNKTPGSEEAFKKVVKAFKCLSDVDSRRQYDHTGLIEEDEYNHQYNVRRRRRRTGHYSYDADFDADELFRAFFGQSDMFPAGRAYRTGGMGSQRREESTGGSPNFFILLQLLPFLLMFLLAYLHFSEPDYSLHQTYSYSVPMMSEKHGVEFYVKSSTFDSKYPLGSSARSDIENNVIRDYKNLLGRYCHAELQRRTWRRNLPTPHCDKLRNLGLA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 593373 594979 - Conep07aG0014400.1 Cone7ag0143 440739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0143 349 CDD DnaJ 104 157 IPR001623 -
Cone7ag0143 349 PANTHER AT29763P-RELATED 1 346 IPR051100 GO:0005789(PANTHER)|GO:0030544(PANTHER)|GO:0051085(PANTHER)|GO:0071218(PANTHER)
Cone7ag0143 349 SMART dnaj_3 103 160 IPR001623 -
Cone7ag0143 349 ProSiteProfiles dnaJ domain profile. 104 168 IPR001623 -
Cone7ag0143 349 SUPERFAMILY Chaperone J-domain 101 213 IPR036869 -
Cone7ag0143 349 Gene3D DnaJ domain 101 218 IPR036869 -
Cone7ag0143 349 Pfam Domain of unknown function (DUF1977) 260 330 IPR015399 -
Cone7ag0143 349 Pfam DnaJ domain 104 165 IPR001623 -
Cone7ag0143 349 PRINTS DnaJ domain signature 106 124 IPR001623 -
Cone7ag0143 349 PRINTS DnaJ domain signature 140 160 IPR001623 -
Cone7ag0143 349 PRINTS DnaJ domain signature 124 139 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0143 K09518 - - vvi:100267066 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0676 Cone-Chr4:3374649 Cone7ag0143 Cone-Chr7:593373 7.48E-75 dispersed
Cone6ag1072 Cone-Chr6:6472305 Cone7ag0143 Cone-Chr7:593373 8.54E-13 dispersed
Cone7ag0143 Cone-Chr7:593373 Cone7ag0639 Cone-Chr7:3290522 7.23E-76 dispersed
Cone4ag0147 Cone-Chr4:671751 Cone7ag0143 Cone-Chr7:593373 4.15E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g188 . . . . . . . Bma05g01033 . Cmo17g00319 . . . . . . . . . . . . . . Cla06g00476 Cam06g0510 Cec06g0511 Cco06g0514 Clacu06g0494 Cmu06g0496 Cre06g1267 . . Cone7ag0143 Cone4ag0147 . . Chy11g01513 . . . . . Bpe05g00834 . . . . . . . Cma17g00329 . Car17g00303 Cpe12g00279 . Bhi12g02049 . . . . . . . . . . . . . Lsi09g01433 . . Cme11g02015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010696 0 3 0 1 1 0 1 1 0 2 1 0 1 2 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 32