Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0162 ATGTATCTGATTTTTGGCCTCTTATTAGTTACTGGTTGTCAAATCACGTTTTTCTTCTTGGAATACTACATACAGCTGCAAAAGTTGCTCATGGCACCATCAAGAAAATCTAGAAGTGTGAATAAGCGGTTCTCTTACGTCAATGAGGTTTCCCCAAACAAATTTGGAGAAAATGGTAGCAAAAGCAGGCAGAAGAAGAGGAAGTTTACTGACATGTTAGGGCCTCCGTGGAGCAAAGAGGAGCTTGAGTGTTTCTATGAGGCTTATCGTAAATATGGGAAAGATTGGAGGAAGGTCGCCACAATGGTACACAGTCGTTCTGTGGAAATGGTAGAGGCTCTTTACACCATGAATAGGGCCTACTTATCTCTTCCAGAGGGCACAGCTTCTGTGGTTGGGCTAATAGCAATGATGACCGATCACTACTGTGTACTGGGAGGAAGTGATAGTGAAGAGAGCAATGAGGGCTCAGGAACAATAAGAAAGCCTCAAAAGCAAGCATGTGGTAAGCTACGTGGTAATAACTCTAGAGGGTTAGAAGGAAATTTCGGAGAGGTATCAACGTCAAGTTATGGCTGCTTGTCATTGTTGAAGAAGAGACGCTCTGGAATTAAGCCTCATGCTGTTGGAAAACGGACTCCCCGGGTCCCTGTGTCATTTTCTTATGATAAAGATAACAAAGACAAGTATGTTTCGCCTTCTAGGCAAGCTTTGAAGCCTAAGATGGATGTTGATGCTGATGTTACCCATGAGATAGCATTAGCATTGACAGAGGCTTCACAGAGGGGCGGTTCTCCTCAACTTTCTCAAACACCTAACCAAAAAGCAGAAGATCTCGGGCCTTCACCTGTTCGCACTGGTGACATAATGCGAAGTGAATCAGAAATGACTAGTGCCAAGCTTCGTTGTAGTGAATTGGATGAAGGTGGTTGTGAATTTAGTTTGGGAAGCACGGGAGCAGATAATGCAGACTATGTCAGAGGAAGAGGTTATTTGATATCCAGAGAAAGGGCTGGTACTGTTGAGGTTCAACAAAAGGGGAAAAGGTACCATAAAAAAAAGCTAGAAGTTGACGAGGGTGTTAACAATCATTTGGATGATATCAAGGAAGCCTGTAGTGGGACAGAAGAGGGACAAAAGTTGGTTTCTGTGAAGTCCTCTTTAAAGGGCCCGAGGAAGAGAAGTAAAAAAGTTATGTTTGGAGGAGATGAAAGCCCTGCATTCGATGCACTACAAGCTTTGGCAGATCTATCCTTGATGATGCCAGGAACAACTGTTGACTCCGAGTCCTCTGCAAAGGGTGAGGAAGCAAAGTTTGATATTGTAGATAAGTTTAAACTGAAAGGAAATCATTCAATTCCAGGAGCTGAAGTCACTGCTTCCAAAACATCTAAAATGACAAAAGTTTTTAGTCACAGTATTGATGCTATTCCTGAGGCAAAGGACAGAGCTCCCCCCTCTACTATTGGAACTCGGAAAAGGAAAATGAAAACTTTGCCATTTAAGGCTTTAGAAGAAGGAAAGAAATCTTTTAGCAAAGGTAAACGCTCTCCACATAATGCTGGACCTGCAAAGCCTGGGAAATTGATGAAAGCACCAGAACATTTGTCTTCAAGTTCTGACCATAGAAGGGAAGAGAATGATTCCGCTTCATTGATTGCATCGGTTCCGTCTGCAAACCAGGTTACCCTACCTACCAAAGTCAGGAACAAGCGAAAGACATGCGATCATAATTTCAGTATACAGAAAGATGCCAAGTCCTCTGTAAAAAAATTAGCTGACCAATCAAAGCCTCTGCATGACAGACTGCTTTATGATAAGGAGAAGCTTTCTAATTGCCTGTCTTTACATCGAGTACGGAGATGGTGTGCTTGTGAGTGGTTTTACAGTGCAATTGACTATCCATGGTTTGCTAAATGTGAGTTTGTGGAATACTTGAATCATGTTGGATTGGGTCACATTCCTAGATTAACTCGTGTTGAATGGAGTGTCATTCGGAGCTCCCTTGGAAGACCACGGAGATTTTCTCAGCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCTATACCGTGAATCTGTTAGGCAACATTATGCAGAAGTCTGTGCTGGTACTAGGGAAGGACTTCCAACTGATTTAGCTCGGCCTTTGTCTGTCGGGCAGCGTGTAGTTGCAGTTCATCCTAGGACCTGGGAGATTTACGATGGAAGTGTACTCACTGTTGACTATAGCAGGTGCAGGGTTCGGTTTGACCAGCCTGAATTAGGGGTCGAGTTTGTCATGGATATTGATTGTATACCTCTAAATCCAATGGAAAATTTGCCTGCATCTGTGATAAGGCAGAGTTTCAACTTTGATAAATTCTTTGGGTACCTCGATGAGCTCAACATCAATGTCCAACTCAAAGAAGGGAAGATTGAAGATTTTATAAAATCTACTCCAAATGAAAATCTAGACAAATCTGAGGACCATGTGTTTCTTTCCCCTTCAGCTCATCACGTTGGTAAACTGTTAAAGCAGTCAAAGGTGGACTTGACGTCTCCTAATTTGCTAGCTAAATTTGGGACCTATGAGACTAATAATACCCAACAAGTGGTGAATTCTCAGCCTTCTGTCCTTGCACAGTTCCAAGCAAAAGAAGCTGATGTTCAAGCCCTTTCTGAGTTGACACGTTCTCTTGACAAGAAGGAAGCTCTTGTATCGGAATTGAGGCGAATGAATGATGCGGTGTCAGAAAACCAGAAATTTGGAGACCACTTACTCAAGGATTGTGAGTACTTCAAGAAGCAATATGCTGCTATTCTCTTACTGTTAAATGATGTCAACGAGCAGGTTTCCTCTGCTCTATTTTGCTTGAGGCAGAGAAATACATATCAAGGAACTTCTCAGCCTATGTTGTTGAAGCCAGTGGCTGATTTAGGTGACCCTGGCTTTCAAGCTCAAGAACATGGATCTCTTGTAACTGAAATTGTGGAAAGTTCTAGAACAAAATCCCGGAAGATGGTCGAGGCAGCTGTACAGGCACTGTCCACTATGAGAAATGGAGAAAATAACATGGAGACCATTGAAGAGGCCATTGATTTTGTTAACAATGAAGTTTCTATATATGATTTGGCTTTGGCACCCACGAAATCTGCTAATGCAGATGCAACACATGTGGCTCTGGCTTCTTCTCAAAATCCTTCGAACTCCTGTCCATCAAATCCATTGGAAACTAGTCAAGTAGTGGACCCTAATTCAAACAGTGCATCTGGACAAAGTGAGACAGAGATTCCCTCAGAACTTATCACACATTGTGTAGCTACTCTACTTACGATTCAGAAGTGTACAGAAAGGCAGTTCCCACCAGCTGATGTTGCTCAGGTACTAGATTCAGCTGTGAATAGTTTGCGGCCATGTTGTTCACAGAACCTTCCAGTTTATGCAGAGATACAGAAATGCATGGGGATTATTAGGAGCCAAATACTCGCCCTCATTCCGACTTAG 3486 42.54 MYLIFGLLLVTGCQITFFFLEYYIQLQKLLMAPSRKSRSVNKRFSYVNEVSPNKFGENGSKSRQKKRKFTDMLGPPWSKEELECFYEAYRKYGKDWRKVATMVHSRSVEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYCVLGGSDSEESNEGSGTIRKPQKQACGKLRGNNSRGLEGNFGEVSTSSYGCLSLLKKRRSGIKPHAVGKRTPRVPVSFSYDKDNKDKYVSPSRQALKPKMDVDADVTHEIALALTEASQRGGSPQLSQTPNQKAEDLGPSPVRTGDIMRSESEMTSAKLRCSELDEGGCEFSLGSTGADNADYVRGRGYLISRERAGTVEVQQKGKRYHKKKLEVDEGVNNHLDDIKEACSGTEEGQKLVSVKSSLKGPRKRSKKVMFGGDESPAFDALQALADLSLMMPGTTVDSESSAKGEEAKFDIVDKFKLKGNHSIPGAEVTASKTSKMTKVFSHSIDAIPEAKDRAPPSTIGTRKRKMKTLPFKALEEGKKSFSKGKRSPHNAGPAKPGKLMKAPEHLSSSSDHRREENDSASLIASVPSANQVTLPTKVRNKRKTCDHNFSIQKDAKSSVKKLADQSKPLHDRLLYDKEKLSNCLSLHRVRRWCACEWFYSAIDYPWFAKCEFVEYLNHVGLGHIPRLTRVEWSVIRSSLGRPRRFSQQFLKEEKQKLNLYRESVRQHYAEVCAGTREGLPTDLARPLSVGQRVVAVHPRTWEIYDGSVLTVDYSRCRVRFDQPELGVEFVMDIDCIPLNPMENLPASVIRQSFNFDKFFGYLDELNINVQLKEGKIEDFIKSTPNENLDKSEDHVFLSPSAHHVGKLLKQSKVDLTSPNLLAKFGTYETNNTQQVVNSQPSVLAQFQAKEADVQALSELTRSLDKKEALVSELRRMNDAVSENQKFGDHLLKDCEYFKKQYAAILLLLNDVNEQVSSALFCLRQRNTYQGTSQPMLLKPVADLGDPGFQAQEHGSLVTEIVESSRTKSRKMVEAAVQALSTMRNGENNMETIEEAIDFVNNEVSIYDLALAPTKSANADATHVALASSQNPSNSCPSNPLETSQVVDPNSNSASGQSETEIPSELITHCVATLLTIQKCTERQFPPADVAQVLDSAVNSLRPCCSQNLPVYAEIQKCMGIIRSQILALIPT 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 669439 683573 - Conep07aG0016400.1 Cone7ag0162 440758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0162 1161 Gene3D - 21 129 - -
Cone7ag0162 1161 SUPERFAMILY Homeodomain-like 71 120 IPR009057 -
Cone7ag0162 1161 Coils Coil 886 913 - -
Cone7ag0162 1161 SMART DIRP_2 628 729 IPR033471 -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 480 549 - -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 258 288 - -
Cone7ag0162 1161 SMART sant 73 121 IPR001005 -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 535 549 - -
Cone7ag0162 1161 CDD SANT 76 111 IPR001005 -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 149 182 - -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 498 513 - -
Cone7ag0162 1161 Coils Coil 680 700 - -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 1053 1090 - -
Cone7ag0162 1161 Pfam DIRP 627 728 IPR033471 -
Cone7ag0162 1161 Pfam Myb-like DNA-binding domain 76 112 IPR001005 -
Cone7ag0162 1161 Coils Coil 1012 1032 - -
Cone7ag0162 1161 ProSiteProfiles SANT domain profile. 72 109 IPR017884 -
Cone7ag0162 1161 MobiDBLite consensus disorder prediction 260 277 - -
Cone7ag0162 1161 PANTHER LIN-9 31 1161 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0766 Cone-Chr10:3871624 Cone7ag0162 Cone-Chr7:669439 7.54E-214 dispersed
Cone3ag0789 Cone-Chr3:4042366 Cone7ag0162 Cone-Chr7:669439 8.41E-217 dispersed
Cone4ag0158 Cone-Chr4:739747 Cone7ag0162 Cone-Chr7:669439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46442 None None None None Cone TF