Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0180 ATGTCTTTGAAGGGTATAATCCAGGACATGAGGTCGCGCTCCCGGCGAGTGGTGCAGGATGGCTGGGCAGCCGAGGTGAGAGACGGTTTGGAGCAGAGCTGCTGGGCTTACATGCCTCAGGAGCTGCTTAGGGAGGTTTTGCTCAGACTCGAGGCCTCCGAGACTGGTTGGCCGCCCAGGAAGACCGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGAGAGATATTACAAAGGAGATCGTTAAAACTCCTGAGCTCTCTGGCTTGTTGACGTTTCCGATCTCCGTCGAGCAGCCTGGACCAAAGGATGTTCTTCTTCAGTGCTTCATAAAACGGAACCGGTCCACTCAATCATATTGTCTTTACCTCAATCTGACTAATGTTAAAATGACAGCACTAGCTGAGGATGGAAAGTTTCTTCTTGCTGCACGCAAGTGTAAACGCCCCACCTGCACGGAGTATATTATCTCTCTTCATGCTGATGATTTCTCAAAGGGGAGCAACACCTATGTTGGGAAACTTAGATCTAATTTTTTGGGAACCAAGTTCACAGTCATTGATGGGCAGCCACCTCATGCGGGAGAAAAGATGACAAAAAGTCGCTCTTCTAGGCTAGTAAACTTGAAGCAAGTTTCGCCTAGGCTCCCTGCAGGCAACTACCCAGTGGCCCACATCTCTTACGAATTAAATGTGTTGGGATCGAGGGGGCCAAGGAGAATGCATTGTATCATGGATTCTATTCCCGCCTCTGCAATTGAACCTGGAGGGAAAGCTCCCACACAGACTGAAATCTCACTAGGGAACATAGAATCCCTTCCATTGCTGCCGTTTTTTCGATCAAAATCAAATCGTACACATAATTTCTTGTCAGGGCCGTTGGCCGGTCAGAAAGATGGGGAATTAATACTAAGAAACAAGGCTCCAAGGTGGCATGAACAACTCCAGTGTTGGTGCTTGAATTTCCATGGACGAGTGACAGTTGCTTCCGTGAAAAACTTTCAATTAGTAGCTTCTCCAGAAAATGGACCAGCTGGACCAGAGCACGAGAAGATCATTCTGCAGTTCGGAAAAGTTAAGAAAGATCTGTTTACAATGGATTACCGATATCCAATCTCAGCATTTCAGGCTTTTGCAATCTGCCTTAGCAGCTTTGACACCAAAATTGCTTGTGAATGA 1176 47.79 MSLKGIIQDMRSRSRRVVQDGWAAEVRDGLEQSCWAYMPQELLREVLLRLEASETGWPPRKTVVACAGVCRSWRDITKEIVKTPELSGLLTFPISVEQPGPKDVLLQCFIKRNRSTQSYCLYLNLTNVKMTALAEDGKFLLAARKCKRPTCTEYIISLHADDFSKGSNTYVGKLRSNFLGTKFTVIDGQPPHAGEKMTKSRSSRLVNLKQVSPRLPAGNYPVAHISYELNVLGSRGPRRMHCIMDSIPASAIEPGGKAPTQTEISLGNIESLPLLPFFRSKSNRTHNFLSGPLAGQKDGELILRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGPEHEKIILQFGKVKKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 753931 756959 - Conep07aG0018400.1 Cone7ag0180 440776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0180 391 PANTHER TUBBY-RELATED 31 390 - -
Cone7ag0180 391 Gene3D - 27 86 - -
Cone7ag0180 391 FunFam Tubby-like F-box protein 92 391 - -
Cone7ag0180 391 SUPERFAMILY Tubby C-terminal domain-like 84 391 IPR025659 -
Cone7ag0180 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 303 320 IPR000007 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 321 337 IPR000007 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Cone7ag0180 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Cone7ag0180 391 Pfam F-box domain 38 78 IPR001810 GO:0005515(InterPro)
Cone7ag0180 391 Pfam Tub family 97 386 IPR000007 -
Cone7ag0180 391 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Cone7ag0180 391 ProSitePatterns Tub family signature 1. 321 334 IPR018066 -
Cone7ag0180 391 Gene3D Tubby Protein; Chain A 94 391 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0910 Cone-Chr20:6566008 Cone7ag0180 Cone-Chr7:753931 5.17E-182 dispersed
Cone7ag0180 Cone-Chr7:753931 Cone7ag1830 Cone-Chr7:11921540 8.43E-150 dispersed
Cone17ag0284 Cone-Chr17:1364840 Cone7ag0180 Cone-Chr7:753931 2.59E-11 transposed
Cone14ag0786 Cone-Chr14:4593835 Cone7ag0180 Cone-Chr7:753931 1.06E-203 wgd
Cone17ag0479 Cone-Chr17:2307427 Cone7ag0180 Cone-Chr7:753931 1.29E-182 wgd
Cone4ag0175 Cone-Chr4:819037 Cone7ag0180 Cone-Chr7:753931 1.18E-269 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46445 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0180 K19600 - csv:101217713 640.573