Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0189 ATGGACGTCAATGGTAAACCAGAATCTTCTGCTCCAAGCAATGGATTGAAAGACATTGCAAGAAAATATCAGGAGGTTAGACTGCAGAAAGCAAAGCTAAAGAGGGAAGATCTCCATTCTGTAAGCCGACGACCGAAACTTGGCTTCTCTGACTCTTTATCACACCTTGAAGATTTGGGATCATTAGAACAGTCCTCGAGAAAAAAAGACCAGGATGATAACGACCGCGACGACAAGGATGATGAAGATGATCAGAAACTTCCTAGAAGCTGCTTCGTATCAGACAAAAAACCACCTTCTTCTTCTTCTTCTGAACCAGATCATCATCAGTTAGGTCACACGATGTCCTCGTTGTCATTGTCGGACGTAAGAAGCGGCAGAAACTGGTGGCGGTTCTTCCGTCTAGTGAAGAAACCCGCTGCCCAGCACAACCACATACCACAGGCCCCACCTAGCGTACAGTCCAGCATAAGCACTCCACTTAAATCCCATGTCTCAAAGCTTACAAGAAGGAAAAGCAAGAGAGTCAAAGACCTCTCGGTCCCATCATTTCAACTCCCTTCTTCTCTACAATCTGATTATCTTAATCACTACTTCAAATCCTCTTGGAAGAACTTCACCCTCTCCAACCTTCAACTTGCAACCGGCAACTTCAATCCCGATAATTTGATTGGGATAGGAGGGTATGCAGAGGTGTACAAGGGGAAGCTGCAGAACGGTCAGACCGTGGCGATAAAAAGGCTGACAAAAGGATCAAACCAAGAGGAGATGATTGCAGATTTCTTATCAGAGCTTGGGATTATAGTTCATGCAGATCATCCTAACATAGCTAAAGTGATTGGATATGGTGTTGAAGGAGGAATGCACCTTGTTCTTCATCTATCACCAAATGGCAGCTTAGCATCTATACTTTATGGGTCAAGGGAGAGATTGAATTGGGAGATTAGATATAAGATTGCATTAGGGATTGCAGAAGGGCTTCATTATCTTCATGAAGGTTGCCAGAGAAGAATCATCCATAAAGATATCAAGGCTTCTAACATCTTACTTAGTGAAGATTTCGAGCCTCAGATATCTGATTTCGGGCTTGCAAAGTGGCTGCCCGATCAATGGACTCATCACACAGTGAACAAGATTGAAGGCACATTTGGTTATCTTCCTCCCGAGTTCTTCATGCACGGAATAGTCGACGAGAAGACGGACGTTTACGCATATGGGGTGATTCTGTTGGAACTGATAACGGGACGACATGCTCTTGATAGTTCACATCAAAGCATTGTTATGTGGGCAAAACCTTTGTTATCTACGGAAAATATAGAACACATAGCAGATCCGTGTCTTTCTGATTCGTATGACCTTGAACAGATGAATCGGATGGTGTTGACTGCTTCTTTGTGTATACATCATGCTTCGATTCATCGGCCTCTGATGAGTCAGGTTTTGAAGATGCTTAAAGGAGAGGAGAAAGAAGGGATCAGTTTGGAGGAGATGGAGAAACTTAGGCAAAAGCCAAGAGTGCCTGAAAGAACCTACTCAGAGGAGCTATTGGATGCAGAGGAGTACAACTCAACTAAGTATCTAAGTGATTTGGGTCAATTAGATTTGTCTGGAAATTATGCAAATTGA 1626 43.3 MDVNGKPESSAPSNGLKDIARKYQEVRLQKAKLKREDLHSVSRRPKLGFSDSLSHLEDLGSLEQSSRKKDQDDNDRDDKDDEDDQKLPRSCFVSDKKPPSSSSSEPDHHQLGHTMSSLSLSDVRSGRNWWRFFRLVKKPAAQHNHIPQAPPSVQSSISTPLKSHVSKLTRRKSKRVKDLSVPSFQLPSSLQSDYLNHYFKSSWKNFTLSNLQLATGNFNPDNLIGIGGYAEVYKGKLQNGQTVAIKRLTKGSNQEEMIADFLSELGIIVHADHPNIAKVIGYGVEGGMHLVLHLSPNGSLASILYGSRERLNWEIRYKIALGIAEGLHYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVNKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVILLELITGRHALDSSHQSIVMWAKPLLSTENIEHIADPCLSDSYDLEQMNRMVLTASLCIHHASIHRPLMSQVLKMLKGEEKEGISLEEMEKLRQKPRVPERTYSEELLDAEEYNSTKYLSDLGQLDLSGNYAN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 805881 808092 - Conep07aG0019400.1 Cone7ag0189 440785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0189 541 Pfam Protein kinase domain 221 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0189 541 SUPERFAMILY Protein kinase-like (PK-like) 192 484 IPR011009 -
Cone7ag0189 541 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 296 499 - -
Cone7ag0189 541 Coils Coil 16 36 - -
Cone7ag0189 541 Gene3D Transferase(Phosphotransferase) domain 1 296 504 - -
Cone7ag0189 541 PANTHER OS08G0249100 PROTEIN 62 530 IPR046958 -
Cone7ag0189 541 ProSiteProfiles Protein kinase domain profile. 218 472 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0189 541 Gene3D Phosphorylase Kinase; domain 1 185 293 - -
Cone7ag0189 541 MobiDBLite consensus disorder prediction 61 91 - -
Cone7ag0189 541 SMART serkin_6 218 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0189 541 MobiDBLite consensus disorder prediction 1 118 - -
Cone7ag0189 541 MobiDBLite consensus disorder prediction 95 118 - -
Cone7ag0189 541 MobiDBLite consensus disorder prediction 20 44 - -
Cone7ag0189 541 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 195 294 - -
Cone7ag0189 541 ProSitePatterns Protein kinases ATP-binding region signature. 224 246 IPR017441 GO:0005524(InterPro)
Cone7ag0189 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0189 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0215 Cone-Chr12:1092937 Cone7ag0189 Cone-Chr7:805881 1.89E-130 dispersed
Cone16ag0295 Cone-Chr16:3359147 Cone7ag0189 Cone-Chr7:805881 8.09E-113 dispersed
Cone2ag0718 Cone-Chr2:32806855 Cone7ag0189 Cone-Chr7:805881 1.82E-111 dispersed
Cone5ag0014 Cone-Chr5:85723 Cone7ag0189 Cone-Chr7:805881 8.10E-111 dispersed
Cone7ag0189 Cone-Chr7:805881 Cone9ag1223 Cone-Chr9:8913265 3.78E-73 dispersed
Cone11ag0885 Cone-Chr11:7295858 Cone7ag0189 Cone-Chr7:805881 4.21E-136 wgd
Cone15ag0801 Cone-Chr15:4913510 Cone7ag0189 Cone-Chr7:805881 8.93E-158 wgd
Cone18ag0673 Cone-Chr18:3574168 Cone7ag0189 Cone-Chr7:805881 8.47E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82995 PF01249 Ribosomal_S21e 5.80E-39 No_clan Cone PK