Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0225 ATGAGTGCTCGGAAATCTGCCGTGCAAGCACTTATCGTCGTGCCAACACGCGAACTTGGTATGCAAGTCACAAAAGTTGCTCGGCTGTTAGCAGCAAAGCCTGGGGAATGTGAATCAGAGCAGAAGTCTTTCGTAGTCATGGCTCTCTTAGATGGAGGATTATTAAAAAGACATAAAAGCTGGTTAAAGGCGGATCCCCCTTCAATCATAGTGGCAACGATTGGAAGTTTGTGTCAGATGCTTGAGAAGCGAGCCTTCAATCTTGATTCCCTTAAGGTCATGGTGATTGACGAGGTTGATTTCGTGTTCGGTTCTTCTAAGCAAGTCAGTTCTGTTCGAAAGCTCTTGACATCATACTCCTCTTGCAATAACCGTCAGACTATTTTTGCCAGTGCATCAGTTCCCCAGCATAAAAGATTTATACATGATTGTATACAGCAGAAGTGGACCAAGAGTGACGTAGTTCATGTTCATGTTAATGCAATCAATCCCATGCCATCATGTCTACATCACAGATTTGTGATATGCCACAAGAAGGAGAAGCATCAGTCCCTCCTATCGTTGTTAGAATTGGATGCACCTCAGTCTGGCATTGTTTTTGTCAATGAACAGTCTGAGAAGTCGAAGAAGGCTGGAAATCCTCCACCTACAACTCAATTAATTGATTTCTTGAAGAATTCTTACAAGGGTTTCTCAGACATCCTCCTCCTTGAAGAAGACATGAATTTCAATTCACGAGCGGCTTCTCTGTCTGAAGTGCGACAGGGAGGAGGTTATCTTCTTGTAGCAACTGACATAGTAGCTAGAGGGATTGACCTGCCAGACACGACCCATATTTACAATTTTGACCTGCCAAGCAATGTTGTTGATTACCTTCATCGAGCTGGAAGAACAGGTAGGGTTCCATTTTCTGACCAGAAATGCATGGTTACCAATTTTATTGTATCTGAAGAGCGGTTTGTTTTGCAAAGGTATGAAAATGAACTGATGTTTACTTGTGAAGAGATAATTATATAG 1017 42.38 MSARKSAVQALIVVPTRELGMQVTKVARLLAAKPGECESEQKSFVVMALLDGGLLKRHKSWLKADPPSIIVATIGSLCQMLEKRAFNLDSLKVMVIDEVDFVFGSSKQVSSVRKLLTSYSSCNNRQTIFASASVPQHKRFIHDCIQQKWTKSDVVHVHVNAINPMPSCLHHRFVICHKKEKHQSLLSLLELDAPQSGIVFVNEQSEKSKKAGNPPPTTQLIDFLKNSYKGFSDILLLEEDMNFNSRAASLSEVRQGGGYLLVATDIVARGIDLPDTTHIYNFDLPSNVVDYLHRAGRTGRVPFSDQKCMVTNFIVSEERFVLQRYENELMFTCEEIII 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 957170 959566 + Conep07aG0023000.1 Cone7ag0225 440821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0225 338 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 181 338 IPR001650 -
Cone7ag0225 338 Gene3D - 1 160 IPR027417 -
Cone7ag0225 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 326 IPR027417 -
Cone7ag0225 338 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 3 333 IPR050547 GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cone7ag0225 338 Pfam Helicase conserved C-terminal domain 181 301 IPR001650 -
Cone7ag0225 338 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 152 IPR014001 -
Cone7ag0225 338 CDD SF2_C_DEAD 169 314 - -
Cone7ag0225 338 Pfam DEAD/DEAH box helicase 4 136 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone7ag0225 338 Gene3D - 167 336 IPR027417 -
Cone7ag0225 338 SMART helicmild6 218 302 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0225 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0225 Cone-Chr7:957170 Cone2ag0251 Cone-Chr2:1299425 1.72E-18 dispersed
Cone7ag0225 Cone-Chr7:957170 Cone1ag0788 Cone-Chr1:53874244 8.44E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g450 . . . . . Bpe14g01313 . . . . Cma06g01426 . Car06g01230 . . . . . . . . . . . . . . . . . . . . Cone7ag0225 . . . . . . . . . . . Bma02g00688 . . Cmo06g01430 . . . . . . . . . . . . . . . . . . . . . . Csa03g01356 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005533 1 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 40