Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0228 ATGCAAGAAATCTTCGGATCAGTTCGATCTTCCTTGAGGTTTCGAACTCCAGGTGGAGACGATGGAGAAGGATTTGGTGGCCTGGTCGAGAAGATAGGCTCGAGCATCAGAAAATCTCGAATCGGAATGTTTTCTAGACAGTCGCTCGCAGCTCTGCCTCCTGCAATTAAAATTGATGGGACTCCTCCGATCAGATGGCGGAAAGGTGAGTTGATTGGCTGTGGTGCATTTGGTCGGGTCTATATGGGAATGAACCTGGATTCTGGAGAGCTTCTTGCTGTGAAACAGGTCTCGGTAGCGGCCAATAGTGCTTCAAGGGAGAAAACACAGGCTCACATTCGAGAATTAGAGGAAGAGAGATATCTTGGGACTGCTAGAGAGGCAGAATCATTGAATATTCTGCTGGAGTTTGTTCCTGGGGGTTCAATATCGTCCCTCTTGGGAAAATTTGGATCTTTTCCTGAGTCTGTTATAAAAATGTATGCTAAGCAGCTATTACTTGGTCTTGAATACCTTCACAAGAATGGAATCATGCACAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAAGGATGTATAAAACTTGCCGACTTTGGTGCATCCAAAAAAGTTGTAGAGCTGGCTACTGTTAATGGTGCTAAGTCGATGAAGGGCACACCATATTGGATGGCTCCGGAAGTTATTCTCCAGACTGGTCATAGCTTCTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCAACAGGGAAGCCTCCATGGAGCCAACAATATCAGGAGGTTGCTGCACTTTTCCATATAGGGACTACTAAATCTCATCCACCCATCCCTGAGCAACTCTCTGCTGAGGCGAAGGATTTTCTGCTAAAATGTTTACAAAAGGAACCAGATTCAAGGCCTTCTGCATCAGACTTGTTACAGCATCCGTTTGTCTCACGAGAGTACCAGTATCCTCATCAAGGACTTCACACCTCAATTATGCAGGAATCTCAAAACCAAGCACCACCACCCGAACTGAATCTTAATAACCTCATGACTTCTTCAATCAGAAGATCAACCTGCATGGGGTTAAAGGATGTTTGTGAAATAGGTAGTATGAGGTCCTCAACCATATTTCCTGAGTATTCATTTGGACTAGGATCCCAGTGGGGCTCTAGCAATTTTGATGATGATATGTGTCAGATAGATGATAAAGATGATATGATGCTCGGCCCATCAGGAAAGTACAAATCAATTATGTTGCCCACTGACTTAAATAAGAGTTTTAATCCTATGAGTGAGCCTAATAATGACTGGCCCTGTAAGTTTGGTGAAAGTGTGGAACTGGACAGAAATGGAATGGACTTATCTCCTGCTGAGACCATCCATAAAGCTGCTGGTGACCCACGAGCTAAGGGGGAGATCGACTTCACATTTCCATATGGTCCATCTGCAGTTGACGATGATGATGAAGTTACTGAGTCTAAGATTAGAGCTTTCCTGGATGAGAAGGCTTTAGATCTGAAGAAATTACAAACTCCTCTATATGAAGAGTTCTACAACACATTAAGTGCAGTTGGTACTCTAGGAGCAGCGGCTTCTGTAAAAGGTGAAAATGTTTCAAGTGTCTTAAACCTACCTCCAAAAAGCAAGTCACCAAGTCGATTTCCCAGCAGAAGATTTTCTGCCCTTGGTGCTTCTACGACCACAAGCCCTAATGGTCGTATAAAATATGGGAGCAGCTTGCATGATAGAGCTTTGCAGGAAATTCAGCCACCTCAGGAGAGTGAATTCAAAGAAATGCTTATTGACCCACCGAAAGAATCCTTTATATCAAGTTTCTCAGAAAGACAACAAAAATGGAAAGAAGAGCTTGATGAAGAGCTTCAAATGAAGCGAGAAATCATTCGTCAAGCAGGTGCAGGAGCAAAAAGACCGTCTTCAAAGGTTCAGACTGTAAACCGACATAAAGATCGCCTATCATTTGCTTTTTCAGGAAAATAG 1995 43.16 MQEIFGSVRSSLRFRTPGGDDGEGFGGLVEKIGSSIRKSRIGMFSRQSLAALPPAIKIDGTPPIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSVAANSASREKTQAHIRELEEERYLGTAREAESLNILLEFVPGGSISSLLGKFGSFPESVIKMYAKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATVNGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSAEAKDFLLKCLQKEPDSRPSASDLLQHPFVSREYQYPHQGLHTSIMQESQNQAPPPELNLNNLMTSSIRRSTCMGLKDVCEIGSMRSSTIFPEYSFGLGSQWGSSNFDDDMCQIDDKDDMMLGPSGKYKSIMLPTDLNKSFNPMSEPNNDWPCKFGESVELDRNGMDLSPAETIHKAAGDPRAKGEIDFTFPYGPSAVDDDDEVTESKIRAFLDEKALDLKKLQTPLYEEFYNTLSAVGTLGAAASVKGENVSSVLNLPPKSKSPSRFPSRRFSALGASTTTSPNGRIKYGSSLHDRALQEIQPPQESEFKEMLIDPPKESFISSFSERQQKWKEELDEELQMKREIIRQAGAGAKRPSSKVQTVNRHKDRLSFAFSGK 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 966856 970762 + Conep07aG0023300.1 Cone7ag0228 440824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0228 664 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 62 318 IPR050538 -
Cone7ag0228 664 FunFam Mitogen-activated protein kinase kinase kinase 2 65 344 - -
Cone7ag0228 664 Pfam Protein kinase domain 67 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0228 664 Gene3D Transferase(Phosphotransferase) domain 1 65 347 - -
Cone7ag0228 664 SUPERFAMILY Protein kinase-like (PK-like) 65 367 IPR011009 -
Cone7ag0228 664 MobiDBLite consensus disorder prediction 648 664 - -
Cone7ag0228 664 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524(InterPro)
Cone7ag0228 664 ProSiteProfiles Protein kinase domain profile. 66 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0228 664 CDD STKc_MAPKKK 65 315 - -
Cone7ag0228 664 SMART serkin_6 66 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0228 664 MobiDBLite consensus disorder prediction 634 664 - -
Cone7ag0228 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1378 Cone-Chr4:11174201 Cone7ag0228 Cone-Chr7:966856 1.52E-13 dispersed
Cone7ag0228 Cone-Chr7:966856 Cone8ag0019 Cone-Chr8:140232 2.43E-72 dispersed
Cone10ag0698 Cone-Chr10:3519546 Cone7ag0228 Cone-Chr7:966856 1.58E-35 wgd
Cone4ag0218 Cone-Chr4:999361 Cone7ag0228 Cone-Chr7:966856 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82996 PF00999 Na_H_Exchanger 2.00E-55 CL0064 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0228 K20606 - rcu:8271606 874.774