Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0230 ATGGTGGTCATTGCGATCATTGTCACCGTTCTCCTCTTCATGCTGCTTCTGATCCTCCTTCTCCTCCTTCTTGCCTTCAAACCTTGGCGCTTCTTTTCCTCTTCTTCTCGTTCCGTCTCAATCCAGGGTGTTGATCTAGAGAGGCCGCTTTTGTCAAATCCCAACAATCTAAATCAAACTCGAAGCTCTGAACTTCCAAGAGATTACAACTTAGACGGAGATATTCATACTGAGGGGGATTATCGGTCCCCTCTTATGCACGGTCTTGTTCATAAAAGGGTTTCAACTGCATCTCCTCATCTGAATCAAGGTGGTAGCATGGTTTCAGATGTGATTTCCGATTCCTTGGATGATATTACTGTTGGCCAGACACTTAAGCGTTCATATGTGACAGACCAGTTTGTCGAATTCCAAATACATAGCAGACAAAGTAGTGGAAATGAGAAACCTCAAGAATACATGCAGAAAGATATCTTACATCGAAGAAGCTTCCTCTCTCTGGAGGTTATCTCTGGTCCATCCTGTGGACTTCAATTTTCATTACAGTCAACAAATAGCTCTAAGCTTCCACTGACCCTTGGGAGAGTGTCTCCTAGTGATCTACAGCTAAAGGATTCAGAGGTGTCAGGGAAGCATGCAATGATAAGCTGGAATATAAATAAATTGAAATGGGAGCTGGTGGACATGGGTAGCCTAAATGGAACACTTTTGAATTCTCAACCAATCAACCATCCTGATTGCGGAAGTAGACATTGGGGAGATCCAATTGAGCTTGCAAGTGGAGACATAATAACTCTTGGTACAACCTCCAAAGTATATGTTCAAATTACACCTGCTACTGAGAGCGCGGTTCCTTTCGGAGTTGGTATGGCTTCAGATCCTATGGCTGTTCGGCGAGGAGGAAAGAAGCTTGCTATGGAAGATGTATCCTATTGTCAATGGCCCCTTGCTGGAACTGATCAGTTTGGATTATTTGGTATATGTGATGGACACGGTGGAGTTGCGGCTGCTAGATCTGCTAGCGAAATTCTTCCAGAGAGGGTTGCTACTATTTTGTCGGATTCAATGAAAAGGGAAAGAGTTTTATCTCTATGTGATGCTTCAGATGTTCTCAGAGATGCATTTTCTCAGACAGAGGCTTCCATGAATCACCATTATGAGGGTTGTACTGCAACATTGCTTCTGGTATGGACTGATGGCGATGATAAGTACTTTGCGCAATGTGCGAATGTTGGAGACTCTGCTTGTGTGCTGAATTTTGATGGGAAACAGATAAAGATGACTGAAGACCATAGAATAACCAGCAAATCGGAAAGACAGAGAATTGAAAAAACAGGAGAGCCATTGAAAGATGGGGAGACACGTCTATGCGGTTTAAACCTAGCACGTATGCTAGGAGACAAATTTCTCAAACAACAAGATAGTCGTTTTAGTTCAGAGCCTTATGTAAGTCAAGTTGTTCATATTGATCAAGCATGCAGTGCATTTGCGCTCATGGCCAGTGATGGCTTATGGGATGTGATAAGTCTCGAGAAAGCAATTCAGCTAGTTTTTCAGGCAAGGGAGAGATACTGTACGGACTCAGAGAACCCGGCTGAAAAGATTGCAAATTTTTTGTTGAGTGAGGCTAGAACATTGCGGACGACGGACAACACTTCAATACTTTTCTTAGATTTTAACACTTCCCATATCAATTCTTGTAAAATCTGGTCACTCCAATGCATGGACGACTGTCGTCCGACCAGACTAGCAAGGATCATACCTGTTGTAAAAAATGGCGAAGAAGCAGAAGCGATTCGAGTCAGAAGCAGAGAACAGAGAACAAACGAGGTGCAGAATGGGCCTGAGCTCGTCAATGGAGAATCTACTGAGAAAAAGAAGTCCTCGACGAGTAATCCCGAGGATGAGCACAGGGAGGTAGACCTGAAGTCCTCAGTGAGCATAGCCCTTCCGGGTTCCATCATCGACAACGCTCAATCCCTTGAGCTCGCTACTCGTGTACTCTCTCTTCTCTCTGATTCAATCTCCGTTCAGTCGCCTGAGAATATTTCCTCTGTGGTAGTATTTGACAGTGGATGTAGTTCAGGAAAAGGCTCTGATGAGAATGAAAGTGGTGCGGCTTTTCTTTTAAGGATCTTGTGGTACCTTGAGACACCACAATACTTGAGAAAAGCTCTATTCCCAAAGCATTTAACAGCTTAA 2202 43.69 MVVIAIIVTVLLFMLLLILLLLLLAFKPWRFFSSSSRSVSIQGVDLERPLLSNPNNLNQTRSSELPRDYNLDGDIHTEGDYRSPLMHGLVHKRVSTASPHLNQGGSMVSDVISDSLDDITVGQTLKRSYVTDQFVEFQIHSRQSSGNEKPQEYMQKDILHRRSFLSLEVISGPSCGLQFSLQSTNSSKLPLTLGRVSPSDLQLKDSEVSGKHAMISWNINKLKWELVDMGSLNGTLLNSQPINHPDCGSRHWGDPIELASGDIITLGTTSKVYVQITPATESAVPFGVGMASDPMAVRRGGKKLAMEDVSYCQWPLAGTDQFGLFGICDGHGGVAAARSASEILPERVATILSDSMKRERVLSLCDASDVLRDAFSQTEASMNHHYEGCTATLLLVWTDGDDKYFAQCANVGDSACVLNFDGKQIKMTEDHRITSKSERQRIEKTGEPLKDGETRLCGLNLARMLGDKFLKQQDSRFSSEPYVSQVVHIDQACSAFALMASDGLWDVISLEKAIQLVFQARERYCTDSENPAEKIANFLLSEARTLRTTDNTSILFLDFNTSHINSCKIWSLQCMDDCRPTRLARIIPVVKNGEEAEAIRVRSREQRTNEVQNGPELVNGESTEKKKSSTSNPEDEHREVDLKSSVSIALPGSIIDNAQSLELATRVLSLLSDSISVQSPENISSVVVFDSGCSSGKGSDENESGAAFLLRILWYLETPQYLRKALFPKHLTA 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 979564 984773 + Conep07aG0023500.1 Cone7ag0230 440826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0230 733 Pfam FHA domain 192 267 IPR000253 GO:0005515(InterPro)
Cone7ag0230 733 SMART FHA_2 190 242 IPR000253 GO:0005515(InterPro)
Cone7ag0230 733 ProSitePatterns PPM-type phosphatase domain signature. 324 332 IPR000222 GO:0043169(InterPro)
Cone7ag0230 733 MobiDBLite consensus disorder prediction 620 640 - -
Cone7ag0230 733 Pfam Protein phosphatase 2C 295 552 IPR001932 -
Cone7ag0230 733 FunFam Protein phosphatase 2C 70 160 294 - -
Cone7ag0230 733 CDD PP2Cc 299 559 IPR001932 -
Cone7ag0230 733 CDD FHA_PP2C70-like 165 274 - -
Cone7ag0230 733 Gene3D - 636 733 IPR029026 -
Cone7ag0230 733 Pfam Putative RNA methyltransferase 646 730 IPR003750 -
Cone7ag0230 733 Gene3D - 295 570 IPR036457 -
Cone7ag0230 733 SUPERFAMILY alpha/beta knot 645 731 IPR029028 -
Cone7ag0230 733 ProSiteProfiles Forkhead-associated (FHA) domain profile. 191 242 IPR000253 GO:0005515(InterPro)
Cone7ag0230 733 MobiDBLite consensus disorder prediction 601 640 - -
Cone7ag0230 733 FunFam Protein phosphatase 2C 70 295 566 - -
Cone7ag0230 733 SUPERFAMILY SMAD/FHA domain 164 274 IPR008984 GO:0005515(InterPro)
Cone7ag0230 733 Gene3D - 160 294 - -
Cone7ag0230 733 SMART PP2C_4 281 557 IPR001932 -
Cone7ag0230 733 ProSiteProfiles PPM-type phosphatase domain profile. 287 559 IPR001932 -
Cone7ag0230 733 SUPERFAMILY PP2C-like 300 560 IPR036457 -
Cone7ag0230 733 PANTHER PROTEIN PHOSPHATASE 2C 300 559 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone7ag0230 733 CDD HsC9orf114-like 645 729 IPR003750 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0823 Cone-Chr15:5471335 Cone7ag0230 Cone-Chr7:979564 3.24E-269 dispersed
Cone7ag0230 Cone-Chr7:979564 Cone4ag1725 Cone-Chr4:12767565 5.99E-20 dispersed
Cone4ag0221 Cone-Chr4:1016629 Cone7ag0230 Cone-Chr7:979564 1.44E-39 transposed
Cone4ag0220 Cone-Chr4:1013385 Cone7ag0230 Cone-Chr7:979564 1.44E-302 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0230 K01090 - csv:101217195 769.229