Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0231 ATGTTGCCTCCGCTTGATGCTCCACACCATTTGCGCAAGCACAAGTGGGCTCCATATCGAGAGGGTGTCACTCTTAGAGAAAGATCTCCAAATATTGTGGGAACAGCAGTGAATGTTGGTCTAAGTAAGAATGTTATAATCGATCAAGGGCTTGAACCTGGAGTAAGAGTTACTGTTGCCATGGGATCTGATTGCAATTTAGAAGCTGGTACGTCCGGTGTTTCATCCAGCAAGCCAAGTGAGGAAGCTGGACTATATTGGGGTTATAAAGTGCGATATGTGCTTCCTCTCTGA 294 45.58 MLPPLDAPHHLRKHKWAPYREGVTLRERSPNIVGTAVNVGLSKNVIIDQGLEPGVRVTVAMGSDCNLEAGTSGVSSSKPSEEAGLYWGYKVRYVLPL 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 984882 985703 + Conep07aG0023600.1 Cone7ag0231 440827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0231 97 PANTHER CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED 1 94 IPR003750 -
Cone7ag0231 97 SUPERFAMILY Nucleic acid-binding proteins 8 88 IPR012340 -
Cone7ag0231 97 Gene3D - 14 81 IPR012340 -
Cone7ag0231 97 Pfam Putative RNA methyltransferase 1 94 IPR003750 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0231 K09142 - - mdm:103453092 150.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0221 Cone-Chr4:1016629 Cone7ag0231 Cone-Chr7:984882 8.90E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g458 Blo01g00131 Blo12g00317 Bda03g00897 Bda08g00230 Bpe04g00842 . Bma04g00794 . Cmo08g01133 Cmo17g00242 . . . . . . . . . . . . . . Cla06g00561 Cam06g0601 Cec06g0601 Cco06g0606 Clacu06g0587 Cmu06g0582 Cre06g1348 . . Cone7ag0231 Cone4ag0220 . . . . . . . . Bpe05g00909 . . . . . . Cma08g01161 Cma17g00256 Car08g01038 Car17g00230 Cpe12g00212 Cpe17g00135 Bhi12g01821 . . . . . . . . . . . . . Lsi09g01339 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1