Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0234 ATGGATACTATAACTGGAAATTCACAACAGGGGCCATTTTCAGTAAAGTTGTGGCCTCCAAGCCATAACACAAGAAAAATGCTTGTGGAGCGGATGACAAACAATCTCACCACTGGATCCATTTTCACCCAGAAGTATGGTATTCTTAGCAAGGAAGAGGCTGGGAAGGAATCAGAACGGATTGAGAATGTCGCATTTGTTACAGCAGATCAAAACTATGAAAATGAGCCGGATGGTGATGGAGGCACTGCAGTGCAGCTTTATGCCAAGGAATGTAGCAGACTCCTTATTGAAGTTCTTAAGAAAGGCCCTAAAAGTGAGGCAGCCACAGAAGCGGTAGTAACATCTGATAGTAATAATAATACAAATGCTCCTCGTGAAACGTTTTTTGATATATCTAAGGGACAACGTGCCTTCATAGAAGCAGAGGAAGCTGAAGAGCTTCTACAGCCATTGAAGGAGCCTGGAAATTCTTACACTAAAATATGCTTTAGCAATAGAAGCTTTGGATTAGGAGCAGCCCATGCAACTGAGCCTATTCTGGTTTCCATCAAAGATCAGTTGAAGGAAGTTGACCTGTCAGATTTCATAGCAGGAAGGCCAGAAGTGGAGGCTCTAGAAGTCATGACGATATTCGCAGCTGCACTTGAAGGCTGCATCTTAAGGTCTTTGAACCTCTCTAACAATGCCTTAGGTGAGAAAGGTGTTAGGGCATTTGGGGCACTACTAAAGTCACAGACTTGCTTGGAGGAGCTATATTTGATGAATGATGGCATTTCGGAAGAGGCTGCTAGAGCTGTGTCTGAGTTGATTCCTTCCACAGAGAAGCTTAAAGTTCTCCAATTCCATAATAATATGACTGGAGACGAAGGGGCAATTGCTATCGCAGAGGTTGTGAAGCATTCTCCTTTACTGGAAGATTTCCGTTGCTCCTCTACCAGAATAGGCTTTGAAGGAGGTTTTGCCTTGTCTGTTTCACTTGAGAGATGTTCTCATTTGAAGAAGCTTGACCTTGGGGATAACATGTTTGGTGTAGAGGCCGGATTGGCATTAAGTAAAGCTCTTTCCTAA 1071 43.32 MDTITGNSQQGPFSVKLWPPSHNTRKMLVERMTNNLTTGSIFTQKYGILSKEEAGKESERIENVAFVTADQNYENEPDGDGGTAVQLYAKECSRLLIEVLKKGPKSEAATEAVVTSDSNNNTNAPRETFFDISKGQRAFIEAEEAEELLQPLKEPGNSYTKICFSNRSFGLGAAHATEPILVSIKDQLKEVDLSDFIAGRPEVEALEVMTIFAAALEGCILRSLNLSNNALGEKGVRAFGALLKSQTCLEELYLMNDGISEEAARAVSELIPSTEKLKVLQFHNNMTGDEGAIAIAEVVKHSPLLEDFRCSSTRIGFEGGFALSVSLERCSHLKKLDLGDNMFGVEAGLALSKALS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 992943 994750 - Conep07aG0023900.1 Cone7ag0234 440830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0234 356 Pfam Leucine Rich repeat 221 239 IPR001611 GO:0005515(InterPro)
Cone7ag0234 356 Pfam Leucine Rich repeat 330 352 IPR001611 GO:0005515(InterPro)
Cone7ag0234 356 SUPERFAMILY RNI-like 128 355 - -
Cone7ag0234 356 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 7 356 IPR045203 GO:0005096(InterPro)
Cone7ag0234 356 Gene3D WPP domain 14 111 IPR038214 -
Cone7ag0234 356 Gene3D Ribonuclease Inhibitor 133 356 IPR032675 -
Cone7ag0234 356 Pfam WPP domain 14 109 IPR025265 -
Cone7ag0234 356 SMART LRR_RI_2 330 356 - -
Cone7ag0234 356 SMART LRR_RI_2 218 245 - -
Cone7ag0234 356 SMART LRR_RI_2 246 273 - -
Cone7ag0234 356 SMART LRR_RI_2 274 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0234 K14319 - - mdm:103453095 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0916 Cone-Chr11:7526359 Cone7ag0234 Cone-Chr7:992943 1.01E-104 dispersed
Cone18ag0650 Cone-Chr18:3376340 Cone7ag0234 Cone-Chr7:992943 1.07E-106 dispersed
Cone7ag0234 Cone-Chr7:992943 Cone4ag0224 Cone-Chr4:1023815 1.49E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0234 Cone4ag0224 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69