Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0270 ATGGACACGCCGGAGAGGAACCAGATCGGAACTGCCTCCCTCTCCAAATTCGAGGATTCCCCTGTCTTCAACTATATCAACAATCTTTCCCCTATCAAGCCCGTCAAATCCATACACATTACCCAGACATTCAACCCGCTTAATTTTGCAGCCTTACCTTCGGTTTTCACTTCTCCGCACGTCACTTCTCACAAGGAATCTAGATTCCTAACAAGGAATAGTGATCTAAATTTATCGAAACCCGAGTCTTCTTCTGAAAATGGGAATAAAGGTTATACAAATGAAGGGGCTGTTAAGGAAATGGCTGAACATGAAGAATTATCTCCTGTTCCTTCCAGTAATGAATCGTTGAAGTCCACAATGGAGGAGAATGATATATTGAAATATGTTTCTGATAGCCCAGACTGCAACCTGGCTGTTCCTTCCAGTAACGAATCGTTGAAGTCCACAATGGAGGAGAATGATATATTGAAATATGTTTCTGATAGCCCAGACTGCAACCTGGCACAACATTGTGGAAATCGAGCAGATCGTAAATTAGAATTAGGAGATAATTCTGGTTTAGTTGTCTCCTTTATCAAAGATAACACTAAACACGATCCATCTGGAACCGGAACAAATTTTCTGGGGATAAGTCAAGCCGAACAAAGAAAGGAGGGGATGGGATATGAGTGGGACAATCTGATTGCTGATGGTGCTGACCTGTTTATTTTCAGCTCTCCAAATAGCTCAGAGGCTATTAGATTGATTCAGAAACCACTAAACACCGTAATGGGACTTTCTACAAGTCCTGTTTTGCAATTTATGCAAAATGAAAATAATGATATGCACAACCTGCAAATCGTCGGATCATTCGATTCTGGTGAACCAAGTGAAAGAGAAGACCCTTCTACTCAACTCGAGGAAGCTTGTGAGATGACAGAAATAGACCAGACACTCAACAACAACCTTGCTTATACAAATTTTGACAAGAGCAATGTTGGAGTGAAAATGCCTGTCTCGAATTTACATCGTGGTATTAGGAGACGCTGTCTTGACTTTGAGACCGCAGGAACTCGAAGACAGAATTTATCTGAAGGTTCAGATAACGGTTTGATTTTACTACCTCCTAATGAAAAGCAAATGGTTGCTCTAAAACCTAATTGTGATTCACCTCGAATCACATTGCCCGGAATAGGTTTGCACTTAAATGCTCTTGCCACAACTTCCGGAAGGCGATTAACTTTACCAAGCTCCAATGTATCAACAAGTTCCACTTCAACCGGTCAAGATCTAATATTATACTCGGCCTCTGCTGATAAAGATATAGATTCGTCTGAAAATGGGGTTCAACTGGAGGAAGAGTTCAATCAGAATAGCCCCAAAAAGAAGAAGCGTAAATTGGATCATTCCGAAGAAGGCGAGTCATGCAAACGATGCAACTGTAAAAAGTCGAAGTGTTTGAAACTTTATTGTGAATGTTTTGCTGCTGGAGTCTACTGCATTGAGCCATGTTCGTGTCAAGAATGCTTCAACAAACCGATACATGAAGAAACTGTGCTTGCAACTCGAAAACAGATTGAATCGCGCAATCCTCTTGCTTTTGCTCCTAAAGTGATTAGGAGTTCTAGTTATATTCCTGAAACTGGGGATGAGCCAAGCAAAACACCAGCTTCGGCACGGCATAAAAGAGGATGTAACTGCAAGAAATCAAATTGTCTGAAGAAATATTGTGAATGCTATCAGGGCGGTGTTGGGTGTTCTGTTAATTGCCGATGTGAAGGGTGTAAAAATGCATTTGGCAGAAAAGATGGATCGGCTCCGATCGCAATAGAAACTGAACAAGAAGATGAAGAAGAAGCAGGTGAACGTGAAAAGAGTGTATTACAAGAACCAGAAATCCAGAGTAATGAAGAAAAGAGCACAATTCCTGCAACCCCATTACAGCTTAGCAGGACGTTTGTTCCACCCACGTTTTCATCGAGTGGTAAACAATCACGTTCTTATTTTCTTACCGTGGGATCCTCATCTGAACTGGGACCTGGGCAGAAGCTCGAGAAGTCTACTTTTCTTGGGCCTCTGCCCAAGTTTGAAAAATGCATGCAAACCGTTACAGAAGATGACATGCCGGACATTCTTCTGTCTGAAGGCTCTCCTGGAACCGGAGTTAAGACGGGTTCCCCGAACGGTAAAAGAGTGTCTCCTCCTCACAGCAACTTCGGGATGTCGCCTCTTTCAAAAACTGGCCGGAAGTTGATTTTGCAGTCTATCCCTTCTTTCCCTTCTCTTACTTCCCAACATTGA 2283 42.27 MDTPERNQIGTASLSKFEDSPVFNYINNLSPIKPVKSIHITQTFNPLNFAALPSVFTSPHVTSHKESRFLTRNSDLNLSKPESSSENGNKGYTNEGAVKEMAEHEELSPVPSSNESLKSTMEENDILKYVSDSPDCNLAVPSSNESLKSTMEENDILKYVSDSPDCNLAQHCGNRADRKLELGDNSGLVVSFIKDNTKHDPSGTGTNFLGISQAEQRKEGMGYEWDNLIADGADLFIFSSPNSSEAIRLIQKPLNTVMGLSTSPVLQFMQNENNDMHNLQIVGSFDSGEPSEREDPSTQLEEACEMTEIDQTLNNNLAYTNFDKSNVGVKMPVSNLHRGIRRRCLDFETAGTRRQNLSEGSDNGLILLPPNEKQMVALKPNCDSPRITLPGIGLHLNALATTSGRRLTLPSSNVSTSSTSTGQDLILYSASADKDIDSSENGVQLEEEFNQNSPKKKKRKLDHSEEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEETVLATRKQIESRNPLAFAPKVIRSSSYIPETGDEPSKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSVNCRCEGCKNAFGRKDGSAPIAIETEQEDEEEAGEREKSVLQEPEIQSNEEKSTIPATPLQLSRTFVPPTFSSSGKQSRSYFLTVGSSSELGPGQKLEKSTFLGPLPKFEKCMQTVTEDDMPDILLSEGSPGTGVKTGSPNGKRVSPPHSNFGMSPLSKTGRKLILQSIPSFPSLTSQH 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1123293 1127100 + Conep07aG0027500.1 Cone7ag0270 440866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0270 760 ProSiteProfiles CRC domain profile. 469 594 IPR005172 -
Cone7ag0270 760 MobiDBLite consensus disorder prediction 703 740 - -
Cone7ag0270 760 MobiDBLite consensus disorder prediction 606 642 - -
Cone7ag0270 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 556 592 IPR005172 -
Cone7ag0270 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 471 506 IPR005172 -
Cone7ag0270 760 MobiDBLite consensus disorder prediction 713 740 - -
Cone7ag0270 760 MobiDBLite consensus disorder prediction 627 642 - -
Cone7ag0270 760 MobiDBLite consensus disorder prediction 62 93 - -
Cone7ag0270 760 SMART CXC_2 468 509 IPR033467 -
Cone7ag0270 760 SMART CXC_2 554 595 IPR033467 -
Cone7ag0270 760 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 758 IPR044522 GO:0003700(InterPro)
Cone7ag0270 760 MobiDBLite consensus disorder prediction 72 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0270 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0864 Cone-Chr14:5496304 Cone7ag0270 Cone-Chr7:1123293 1.85E-216 dispersed
Cone15ag0860 Cone-Chr15:6506636 Cone7ag0270 Cone-Chr7:1123293 1.33E-211 dispersed
Cone17ag1032 Cone-Chr17:7825791 Cone7ag0270 Cone-Chr7:1123293 5.50E-54 dispersed
Cone4ag0740 Cone-Chr4:4067839 Cone7ag0270 Cone-Chr7:1123293 1.84E-32 dispersed
Cone7ag0270 Cone-Chr7:1123293 Cone7ag0677 Cone-Chr7:3722160 9.75E-31 dispersed
Cone10ag0689 Cone-Chr10:3357475 Cone7ag0270 Cone-Chr7:1123293 6.35E-100 wgd
Cone4ag0261 Cone-Chr4:1167255 Cone7ag0270 Cone-Chr7:1123293 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029786 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46450 PF13920 zf-C3HC4_3 4.20E-17 CL0229 Cone TF