Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0290 ATGAGAACCAGAAACAACTTTGTCCTTTCTCCCCTGCTCCTTTTCTTCCTCTTCTTCCTCTTCTTGTTCTTCAACCACTCAATTGCCCAACCAGAAACCCAACAGGGCTTCACCTGCACACCGAACCAGACCACCAACCCATGCCAAGCCTACGTCTTTTACCGAGCCATGGCTCCAGATTTCCTCAACCTAGCCGCCATAGGCGATCTCTTCGCCCTGAGCCGGCTCGAAATAGCTCAACCCAGCAACATCTCCAACGTATCTTTCCCTCTCGTCCCTAACGAACCACTCTTCATACCAATAACTTGCTCCTGCAATCCCGTCATAATCAACAACACATCTACAAGCATCTCTTACGCTAATCTGTCTTTCACAATCAATCAAGGTGACACCTTTTATCTTGTCTCCACAAATAAATTCCAGAACCTAACAGCTTACCCATCTGTTGAAGTTGTTAATCCTAATCTCGAAGCTACTAATCTTCCAGTTGGCGTCACCGCCATCTTTCCAATCTTTTGCAAGTGCCCAAATAAAACCCAGTTAGGGAATCAAGTCAAATATCTTGTTTCTTACGTGATTCAGCCTTCTGACAACTTGAGCTCAATCGCTTCACGGTTTGCAGTAGATACTCAGTCTATAGTCGATGCTAATGGGAATAGTAATCTTAGTCAGCCTTTTGACACTATTTTTGTTCCTGTTAATCAGCTTCCTGGATTAACACAGCCTACTGAATTTCCCTCTCCACCCCCTGTGAAAACCGAGGAGAAGGGGGTTAATAAAGGGCTGGCAATCGGGTTAGCGGTTTGTGGGTTTTTGTTGATTTTGGTTAGTGGGTTGTGGGTTTGTGGTGTGGTTTTGTTTAAAAAGAGAAGAGGTGGGGAGGAAGATGAGAAGCAGAAGTTGCAGGTGAGGGGGAAAGGAGGGGTGAAGGGAATTGGGGTGAATTTAATGGCGGATGTGTCAGATTGTTTGGACAAGTACCGAGTTTTTGGGATTGATGAATTGAACGAGGCTACTGATGGTTTCAGCGAGAAAAGCTTGATTCAAGGTTCGGTTTACAAAGGCTGCATTGCCGGTGATGTTTATGCCGTGAAGAAGATGAAATGGGATGCCTATGAGGAGCTCAAGATCTTGCAGAAGGTAAACCATGGAAATCTAGTGAAGATAGAAGGCTTCTGCATAGACCCAGAAGACGCAAGTTGCTATTTAATCTACGAATACATTGAAAATGGCTCTCTTTATTCATGGCTACATGAAAACCAGGAAAATAAGTTAGATTGGAAAACCCGGTTGAGAATCGGGATCGATATTGCACACGGCCTTCAATACATCCACGAGCACACAAGACCAAGAGTTGTCCATAAAGACATCAAAAGCAGCAACATTCTCTTAGATTCAAACATGAGAGCTAAAATTGCAAACTTCGGTCTAGCCAAATCAGGCTGCAATGCCATAACCATGCATATTGTAGGCACTCAAGGCTACATAGCACCCGAATATTTAGTCGATGGGGTTGTTTCGACAAAGATGGATGTGTTTGCATTTGGGGTTGTTTTGCTCGAGCTTGTTTCGGGAAAGGAAGCTATTGATGAGGACGATGGGAGTGTTTTGTGGGTGCAAGGGAGTGCTGTTATGGAAAGGAATGATGAAAAGCAAAGAGTGGAGAGGCTGAGGAATTGGATGGATGAGGCTCTTGTTCGTCATGAACAGTCTTTCTCGATCGACAGTGTTATGGATGTTATGAATATTGCTGTTGCTTGTGTGCAGAAAGATCCTACAAAGAGGCCGAGTATGGTTGAGATTGTTTATGCTCTGAGTAAGAGTGATGAGGGGTTGTTCGATATGTCGGAAGATAATCTATCTGCAACTCCTTTAGCAGCTCGGTAA 1887 44.25 MRTRNNFVLSPLLLFFLFFLFLFFNHSIAQPETQQGFTCTPNQTTNPCQAYVFYRAMAPDFLNLAAIGDLFALSRLEIAQPSNISNVSFPLVPNEPLFIPITCSCNPVIINNTSTSISYANLSFTINQGDTFYLVSTNKFQNLTAYPSVEVVNPNLEATNLPVGVTAIFPIFCKCPNKTQLGNQVKYLVSYVIQPSDNLSSIASRFAVDTQSIVDANGNSNLSQPFDTIFVPVNQLPGLTQPTEFPSPPPVKTEEKGVNKGLAIGLAVCGFLLILVSGLWVCGVVLFKKRRGGEEDEKQKLQVRGKGGVKGIGVNLMADVSDCLDKYRVFGIDELNEATDGFSEKSLIQGSVYKGCIAGDVYAVKKMKWDAYEELKILQKVNHGNLVKIEGFCIDPEDASCYLIYEYIENGSLYSWLHENQENKLDWKTRLRIGIDIAHGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYLVDGVVSTKMDVFAFGVVLLELVSGKEAIDEDDGSVLWVQGSAVMERNDEKQRVERLRNWMDEALVRHEQSFSIDSVMDVMNIAVACVQKDPTKRPSMVEIVYALSKSDEGLFDMSEDNLSATPLAAR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1247880 1250618 + Conep07aG0029700.1 Cone7ag0290 440886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0290 628 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Cone7ag0290 628 Pfam Protein kinase domain 350 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0290 628 Gene3D Phosphorylase Kinase; domain 1 314 407 - -
Cone7ag0290 628 FunFam PTI1-like tyrosine-protein kinase 3 408 618 - -
Cone7ag0290 628 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 29 613 IPR052611 -
Cone7ag0290 628 SMART serkin_6 342 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0290 628 SUPERFAMILY Protein kinase-like (PK-like) 327 605 IPR011009 -
Cone7ag0290 628 ProSiteProfiles Protein kinase domain profile. 298 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0290 628 SUPERFAMILY LysM domain 189 233 IPR036779 -
Cone7ag0290 628 SMART LysM_2 190 232 IPR018392 -
Cone7ag0290 628 Gene3D LysM domain 188 237 IPR036779 -
Cone7ag0290 628 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
Cone7ag0290 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0290 628 Pfam LysM domain 191 223 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1352 Cone-Chr6:10877275 Cone7ag0290 Cone-Chr7:1247880 1.30E-97 dispersed
Cone7ag0290 Cone-Chr7:1247880 Cone8ag0086 Cone-Chr8:449382 7.59E-102 dispersed
Cone7ag0290 Cone-Chr7:1247880 Cone9ag1287 Cone-Chr9:9646456 1.07E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83000 PF11250 FAF 3.10E-18 No_clan Cone PK