Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0310 ATGTTGCCGAATTTGAAGCGAAAGAGAGGCTGCAACCCCGAATCAAACAAAGATGAGCAAGCTGTTACTGAGGCATCACTAAATAAACTTGTTGGTGCTGCTGAGGTTTATAACTTGGAGGAAATGGAACCTCCTAGTACACTTACTTGTGATTTAAAGCCGTACCAGAAACAAGCTCTCTATTGGATGTCTGAACTAGAGGAAGGAGTTGATGTAGAGAAAGCAGCACGAACTCTTCATCCATGCTGGTCCGCTTATCGGATATGTGATGAGAGGGCATCGTCAATCTATCTGAACGTTTTCTCTGGGGAGGCAACTACTCAATTTCCAACAGCAACACAAATGGCAAGAGGAGGAATTCTAGCTGATGCGATGGGCCTAGGAAAGACTGTGATGACCATTTCTCTAATACTAGCAAGGCCCGGCAAAGGAAGTTCTGATAACCAAGAACTCATTGCAAAAACAGCTGATAACACTGGAAAGAAAAAGAAAGACTCAAGCTTATGTATGGAATATGCAGATGACCCTGTACTAACACCATGTGCACATAGGATGTGCAGAGAGTGTCTGCTGTCCAGCTGGTGTACCCCGGCAACTGGCATGTGTCCGATGTGTCGGCAAATTATTGAGAGGAAGGACCTTGTGATGTGTCCGTCTGGGGGCCATTTTCGTATTGATGTGGAGAAGAACTGGAAGGAGTCTTCGAAGGTTTCAGAGCTGATGGATTGCTTGGAGAAAATTCGCCGGTCAGGTTCCGGTGAAAAGAGCATCGTGTTTAGTCAGTGGACTTCGTTTTTGGATCTGTTAGAGATTCCTTTGAAGAGAAGAGGGATTGAGTTCTTGAGGTTTGATGGGAAGTTAGCCCAGAAGCAGAGAGTAAAGGTCCTAAAAGAGTTTAGTGAGACACAAGACAAAAGGGTATTGTTAATGTCTCTGAAAGCTGGAGTGGGGTTGAACTTGACAGCAGCTTCTAGAGTATTTCTAATGGATCCATGGTGGAATCCCGCAGTTGAGGAACAGGCAATTATGAGGATTCATCGGATTGGACAAAAGAGAACGGTTCGTGTTAAAAGATTCATTGTAAAGGACACTGTAGAAGAGCGCCTGCAACAAGTGCAGGAACGGAAGCAGAGGATGATTGCCGGAGCCCTCGCCGACGAGGAAGTTCGGACAGCCAGAATCGAAGATCTCAAAATGCTCTTCAGATGA 1209 45.41 MLPNLKRKRGCNPESNKDEQAVTEASLNKLVGAAEVYNLEEMEPPSTLTCDLKPYQKQALYWMSELEEGVDVEKAARTLHPCWSAYRICDERASSIYLNVFSGEATTQFPTATQMARGGILADAMGLGKTVMTISLILARPGKGSSDNQELIAKTADNTGKKKKDSSLCMEYADDPVLTPCAHRMCRECLLSSWCTPATGMCPMCRQIIERKDLVMCPSGGHFRIDVEKNWKESSKVSELMDCLEKIRRSGSGEKSIVFSQWTSFLDLLEIPLKRRGIEFLRFDGKLAQKQRVKVLKEFSETQDKRVLLMSLKAGVGLNLTAASRVFLMDPWWNPAVEEQAIMRIHRIGQKRTVRVKRFIVKDTVEERLQQVQERKQRMIAGALADEEVRTARIEDLKMLFR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1343583 1345602 - Conep07aG0031800.1 Cone7ag0310 440906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0310 402 SMART helicmild6 267 349 IPR001650 -
Cone7ag0310 402 CDD SF2_C_SNF 234 360 IPR049730 -
Cone7ag0310 402 Gene3D - 107 161 IPR038718 -
Cone7ag0310 402 Pfam Zinc finger, C3HC4 type (RING finger) 168 211 - -
Cone7ag0310 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 210 IPR013083 -
Cone7ag0310 402 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 236 398 IPR001650 -
Cone7ag0310 402 Pfam Helicase conserved C-terminal domain 239 349 IPR001650 -
Cone7ag0310 402 SUPERFAMILY RING/U-box 167 215 - -
Cone7ag0310 402 SMART ring_2 166 205 IPR001841 -
Cone7ag0310 402 Coils Coil 362 382 - -
Cone7ag0310 402 MobiDBLite consensus disorder prediction 1 22 - -
Cone7ag0310 402 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Cone7ag0310 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 146 IPR027417 -
Cone7ag0310 402 ProSiteProfiles Zinc finger RING-type profile. 168 206 IPR001841 -
Cone7ag0310 402 Pfam SNF2-related domain 55 218 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone7ag0310 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 392 IPR027417 -
Cone7ag0310 402 Gene3D - 211 400 IPR027417 -
Cone7ag0310 402 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 17 145 IPR050628 GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0008094(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0310 K15505 - - ath:AT5G43530 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1724 Cone-Chr5:12268582 Cone7ag0310 Cone-Chr7:1343583 2.55E-33 dispersed
Cone7ag0310 Cone-Chr7:1343583 Cone9ag1226 Cone-Chr9:8929108 4.97E-20 dispersed
Cone1ag0823 Cone-Chr1:54072306 Cone7ag0310 Cone-Chr7:1343583 4.32E-20 transposed
Cone4ag0312 Cone-Chr4:1421931 Cone7ag0310 Cone-Chr7:1343583 4.86E-65 transposed
Cone18ag0816 Cone-Chr18:5015116 Cone7ag0310 Cone-Chr7:1343583 2.09E-10 wgd
Cone4ag0311 Cone-Chr4:1419177 Cone7ag0310 Cone-Chr7:1343583 2.23E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46456 PF13326 PSII_Pbs27 1.50E-45 No_clan Cone TR