Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0313 ATGGCGCTTATCTCAGATGCTATAGATTTGTCTTACAATCGTGAAAAGGAGCTTAGAGACTTCGATGAAACAAAAGCCGGTGTAAAGGGTTTAGCCGATTCAGGCATAATCAATGTCCCGAAAATATTCGCTCGCCCGATTAATCACCTGACCAAGAAATATTACTTGAACAATCAACAACAAATCCAAGTTCCTACAGTAGATCTTAGTGGCTTAGAAACCAGCGATCGGCATGAGGAGATTGTTAGCGAGGTCCGAAACGCATCCGAGAAGTGGGGATTTTTCCAAGTAGTTAATCATGGGATACCCCAACAATTGTTGGATGATATGATAGATGGAGTGAAAAAGTTCCATGAGCAAGATGTTGAGGTGAAGAAAGAGTTCTATTCAAGAGATATGTCAAGAAAAGTGATGTTGAGCTCCACCTTTGATTTGTATCGAGTGGCACATCCTGATTGGAGGGACACGCTCACCATTTCTTTCAAGGATGATGATAATCTTGACCCACTTGACTTTCCAGCTATCTTGAGAGAAACAACAGTGGAGTACTACAAGAATATGGAAAAATTGAGGGATACTCTACTCGGGTTATTCTCAGAGGCGCTCGGACTTAGACCGGACCACCTAAAAGGCATGGGATGTGGGGAGGATTGCAGCTTTGTGTGTCACTACTACCCAGCCTGCCCTCAGCCTGAACTGACTGTGGGGGCAAGGGAACACTGGGATCCTGACTTCATAACCATTCTATTACAAGACCAAAGTGGTGGCCTTCAAGTTGTTCATGAAGATCAATGGATTAATGTCCCACCTCTTCATGGTGGTCTTGTAGTTAATGTTGGAGACTTTCTCCAGATGGTGTCAAATGATAAGTTCAAAAGTGATGAACATAGGGTAATAGCCCAAAACTTTGGACCAAGAATTTCCGTGGCCTTCTTCGTTACAGCTAGTCTTGAAGGAACTACGTATGGTCCTATTCAAGAGTTAACATGCGACAACATTAACCCTCCAATTTACAGAGAATTCTCCTTGGGTGAATATTATCGTGACTACCGTGCCAAGGAAATTCAGGAGCATCCTCACTTAGCTTATTTCAGGCGTTGA 1101 43.14 MALISDAIDLSYNREKELRDFDETKAGVKGLADSGIINVPKIFARPINHLTKKYYLNNQQQIQVPTVDLSGLETSDRHEEIVSEVRNASEKWGFFQVVNHGIPQQLLDDMIDGVKKFHEQDVEVKKEFYSRDMSRKVMLSSTFDLYRVAHPDWRDTLTISFKDDDNLDPLDFPAILRETTVEYYKNMEKLRDTLLGLFSEALGLRPDHLKGMGCGEDCSFVCHYYPACPQPELTVGAREHWDPDFITILLQDQSGGLQVVHEDQWINVPPLHGGLVVNVGDFLQMVSNDKFKSDEHRVIAQNFGPRISVAFFVTASLEGTTYGPIQELTCDNINPPIYREFSLGEYYRDYRAKEIQEHPHLAYFRR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1362057 1363477 + Conep07aG0032100.1 Cone7ag0313 440909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0313 366 Pfam 2OG-Fe(II) oxygenase superfamily 217 314 IPR044861 -
Cone7ag0313 366 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 214 315 IPR005123 -
Cone7ag0313 366 Gene3D - 20 348 IPR027443 -
Cone7ag0313 366 SUPERFAMILY Clavaminate synthase-like 25 352 - -
Cone7ag0313 366 FunFam 1-aminocyclopropane-1-carboxylate oxidase homolog 1 18 349 - -
Cone7ag0313 366 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 23 349 - -
Cone7ag0313 366 Pfam non-haem dioxygenase in morphine synthesis N-terminal 64 165 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0313 Cone-Chr7:1362057 Cone8ag0582 Cone-Chr8:4835565 1.04E-56 dispersed
Cone14ag0144 Cone-Chr14:695160 Cone7ag0313 Cone-Chr7:1362057 7.18E-105 wgd
Cone15ag0152 Cone-Chr15:732318 Cone7ag0313 Cone-Chr7:1362057 4.90E-105 wgd
Cone20ag0807 Cone-Chr20:5714178 Cone7ag0313 Cone-Chr7:1362057 7.82E-107 wgd
Cone4ag0317 Cone-Chr4:1442966 Cone7ag0313 Cone-Chr7:1362057 5.32E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g652 . . . . . . . . . . . Cma14g01801 . Car14g01618 . . . . . . . . . . . . . . . . . . . Cone7ag0313 . Lsi05g01707 . . . . . Bda11g00624 . . . . Bma06g01595 . . Cmo14g01839 . . . . . Cpe17g00187 Bhi12g01637 . . Lac12g2192 Hepe03g0269 . Lcy13g0358 . . . . . . . . Csa03g01230 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222