Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0314 ATGGATCCGATTCTTGACGACTCTTGCTGGAAATTCATCGGCGACGCTCTGATCGATGGCGGAGACGACGGTGGAATTCACTCTCTCGGTTTTTCATGGCCGAGTAATCTCAGTGATGGCGGCGCTGAATTTGATTTCCCCGGCGGCGGGGTTACTGTTGCGTCGGAAGAGAAGGAATGTACTCGGAAAAGGGCTCGCAATGAATCGTGCAGTAGACCCACATCTAAAGCATGCCGGGAGAAATTGCGAAGAGAAAGATTGAAAGATGGGTTTCGAGATTTGAGCATTGCTTTGGAATCTGGTAGACCTGCCAAAACGGACAAAGCAGCTATACTCGATGATGCCATCAAAGTTTTAAATCAACTAAGAAATGAAGCTCAGGAGCTCAAAGAGACTAATGAAAAGCTAGTAGAAGAGGTGAAGATTTTAAAGGCAGAGAAAAATGAACTTCGTGAGGAAAAAACAATACTGAAAGCGGACAAAGAAAGGGTTGATCAGCAACTAAAAGCTATGAGCATTCCCTCTAATGGAGTTATGGCATCACATATTCCAAGTGCATATCATCATCCTCATCACTTTGCAGGAAACAAGACGGCAGTTTTTCCTAGTTATGGTCTGATGCCCATGTGGCAGTATCTACCTCCATCTTCTTGCGATACATCTAACGATCACCAGCTCAGGCCTCCTGCTGCCTAG 696 45.55 MDPILDDSCWKFIGDALIDGGDDGGIHSLGFSWPSNLSDGGAEFDFPGGGVTVASEEKECTRKRARNESCSRPTSKACREKLRRERLKDGFRDLSIALESGRPAKTDKAAILDDAIKVLNQLRNEAQELKETNEKLVEEVKILKAEKNELREEKTILKADKERVDQQLKAMSIPSNGVMASHIPSAYHHPHHFAGNKTAVFPSYGLMPMWQYLPPSSCDTSNDHQLRPPAA 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1366874 1368527 - Conep07aG0032200.1 Cone7ag0314 440910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0314 231 PANTHER BHLH TRANSCRIPTION FACTOR 55 231 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cone7ag0314 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 136 IPR036638 GO:0046983(InterPro)
Cone7ag0314 231 SMART finulus 77 128 IPR011598 GO:0046983(InterPro)
Cone7ag0314 231 CDD bHLH_AtILR3_like 76 151 - -
Cone7ag0314 231 Gene3D - 71 151 IPR036638 GO:0046983(InterPro)
Cone7ag0314 231 Coils Coil 112 167 - -
Cone7ag0314 231 Pfam Helix-loop-helix DNA-binding domain 74 123 IPR011598 GO:0046983(InterPro)
Cone7ag0314 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0107 Cone-Chr1:591227 Cone7ag0314 Cone-Chr7:1366874 5.73E-25 dispersed
Cone7ag0314 Cone-Chr7:1366874 Cone8ag1455 Cone-Chr8:11228658 2.37E-30 dispersed
Cone4ag0319 Cone-Chr4:1448078 Cone7ag0314 Cone-Chr7:1366874 3.09E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46457 PF03468 XS 5.30E-25 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0314 - - - 0.0