Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0318 ATGGAGGAGGTTCGTAGGGGTAAAGAACAAAAGCAAGACAAAGAAGAGACTAGGTACCGGGGAGTGAGGAAGAGGCCATGGGGAAAGTATGCGGCCGAAATCAGGGATCCGTCGAAAAATGGGGCGAGATCGTGGCTTGGAACGTTTGATACTGCGGAAGAAGCGGCTAGGGCTTATGATAAGGCGGCGTTTAACTTGAGAGGTCATCTTGCTACTCTTAACTTCCCGAGTGAATATTATGCTCGAGTGCTGGGATCTCCTCCTCACCCTCCTCACCTCATGTCGTTTTCTTTATTGTCTTCTTCCTCGTCCGGTTCCTCCCATGTTCCGAGTAGGAGTAGTATTTCTAACTTCGAGAGAGGAGGCTCGTCCTTGGGTAATCAGGGAAAGCAAGTGTTCGAGTTTGAGTACTTGGATGACAAGGTGTTGGAGGATCTTCTTGACTCATAA 450 48.89 MEEVRRGKEQKQDKEETRYRGVRKRPWGKYAAEIRDPSKNGARSWLGTFDTAEEAARAYDKAAFNLRGHLATLNFPSEYYARVLGSPPHPPHLMSFSLLSSSSSGSSHVPSRSSISNFERGGSSLGNQGKQVFEFEYLDDKVLEDLLDS 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1377456 1377905 - Conep07aG0032600.1 Cone7ag0318 440914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0318 149 Pfam AP2 domain 17 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 CDD AP2 17 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 PANTHER DNA-BINDING DOMAIN 9 107 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone7ag0318 149 SMART rav1_2 18 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 MobiDBLite consensus disorder prediction 1 22 - -
Cone7ag0318 149 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 MobiDBLite consensus disorder prediction 96 127 - -
Cone7ag0318 149 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677(InterPro)
Cone7ag0318 149 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0318 149 FunFam Ethylene-responsive transcription factor 2 17 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0156 Cone-Chr15:745558 Cone7ag0318 Cone-Chr7:1377456 4.81E-39 dispersed
Cone4ag0322 Cone-Chr4:1457242 Cone7ag0318 Cone-Chr7:1377456 3.09E-40 dispersed
Cone4ag0323 Cone-Chr4:1459183 Cone7ag0318 Cone-Chr7:1377456 6.63E-84 dispersed
Cone7ag0318 Cone-Chr7:1377456 Cone7ag1000 Cone-Chr7:7732787 5.79E-27 dispersed
Cone7ag0317 Cone-Chr7:1375445 Cone7ag0318 Cone-Chr7:1377456 1.03E-31 tandem
Cone7ag0318 Cone-Chr7:1377456 Cone7ag0319 Cone-Chr7:1382619 1.20E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46459 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0318 - - - 0.0