Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0319 ATGGATTCCTCTGTTTTCGGCCACTCTTTCTGTTCTGATTTCTCACCTGAATCTTCTATTGATTCGTTTCAATGGAGTGGTCTTGAATTTGATCGCTTCGATTCTCTTCCCTTCAATGAAAACGACTCAGAAGAAATGCTCCTCTTTGGACTACTTTCCGATGCAATTGCCCAGGAATCGCAGGCAGAGTCTGTTTCAGCAAGTCAAGTCAAGGAAGAAGAGGTCGATTCATCGAATTCAATGACCAAAGGAAACCCGGTTGAGGAACCAACGACGACGTCATACAGAGGGGTTCGGAGGCGACCGTGGGGGAAATTCGCGGCGGAGATAAGAGATTCTACTAGACATGGGATTAGGGTGTGGTTAGGAACGTTTGATAGTGCTGAAGCGGCTGCTTTGGCTTATGATCAAGCTGCTTTTTCTATGAGGGGGCCCTCCGCTATACTTAATTTTCCGGTAGAGAGAGTGCGGGAATCTCTCGGGGAAATGGGTGGTGGGTTTTCCGATGATGGCGGCTCTCCGGTGTTGGCTCTGAAGAGAAAGCATTCATTGAGAAGGAAAATGGGATCCAAGAAAATGAAAAAGATGGTGAAGAGTGTGGTCGTGTTGGAAGATTTAGGTGCTGATTATTTGGAAGAACTGCTAAGGTTGTCTGAGAGAACTAGTTAA 669 46.34 MDSSVFGHSFCSDFSPESSIDSFQWSGLEFDRFDSLPFNENDSEEMLLFGLLSDAIAQESQAESVSASQVKEEEVDSSNSMTKGNPVEEPTTTSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGPSAILNFPVERVRESLGEMGGGFSDDGGSPVLALKRKHSLRRKMGSKKMKKMVKSVVVLEDLGADYLEELLRLSERTS 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1382619 1383287 + Conep07aG0032700.1 Cone7ag0319 440915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0319 222 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0319 222 MobiDBLite consensus disorder prediction 63 95 - -
Cone7ag0319 222 SMART rav1_2 94 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0319 222 CDD AP2 95 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0319 222 PANTHER DNA-BINDING DOMAIN 67 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone7ag0319 222 ProSiteProfiles AP2/ERF domain profile. 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0319 222 MobiDBLite consensus disorder prediction 63 92 - -
Cone7ag0319 222 PRINTS Ethylene responsive element binding protein signature 134 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0319 222 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0319 222 SUPERFAMILY DNA-binding domain 94 154 IPR016177 GO:0003677(InterPro)
Cone7ag0319 222 FunFam Ethylene-responsive transcription factor 2 93 154 - -
Cone7ag0319 222 Pfam AP2 domain 94 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0324 Cone-Chr4:1464822 Cone7ag0319 Cone-Chr7:1382619 5.98E-137 dispersed
Cone7ag0319 Cone-Chr7:1382619 Cone7ag1000 Cone-Chr7:7732787 2.37E-50 dispersed
Cone7ag0318 Cone-Chr7:1377456 Cone7ag0319 Cone-Chr7:1382619 1.20E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46460 PF04927 SMP 1.00E-14 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0319 K14516 - mdm:103453426 213.386