Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0355 ATGGGCTCTACTATCCCCGTCCCCGTTCTCGACCTCAATCTTCTCCCTGACCCACCCGCCTCTTTCGAGAACAACAAGAACAGCTACAGCTTCAAAATCCCCAAAATTGAGCCCAAGCACGAACCGTTCGACGAAGCACCGTTACAGACCCCTCAACCACCTCAACAAACGCCGCAACCCCTACAATCCTTCTTGTCGGACCCTTCACCTAACATTTTCTCCCATTCACCAGTCACTCCTCCTCCCCTCCCCGAACAAAACCTTACCTCCTTCTCTCAACCTTCAAATATATCCTTCTCAGACGTTGACAATGTCCACTCCGAATTCAACCGCATTAAAGAGCTTTTCAACACCGCTTTTCCCAAGAGGTTGGAGAACTACTTATGCGAGGATGAATTAGATCACGAATCTGGAGCAATCGTCCCAGTCCCAGTCCCGCCAGAAAATCAGGTTTCGACTACAGTTGTGGCAAGGAGGAAATATCCAAAGCGATCGTCAGAGCTGGTCAGAGTAACCGATCTCAGCGTTGATGATCAGAGATACTTTCGAGACGTAGTGAGACGCACAAGAATGATCTTCGATTCTCTTCGCATTTTAACCCTAGTGGAGGTAGAGAAACGCCGCGATTCAGGTCTCTCTAGAAGGCTCAGAGGCGACTTGGTAGCTTCCTCTGTTTTAAGAGAACGTGGACTCTGGCTAAATCGTGATAAACGGATTGTGGGTTCGATTCCAGGTGTGTATATAGGCGATTTGTTCCTCTTTAGAATGGAATTATGCGTGGTTGGGCTTCATGGTCAGACTCAAGCTGGAATCGACTATGTTCCAGCTAGTCAGAGCTCAAATGGAGAGCCTATTGCTACGAGCATAATAGTGTCGGGTGGATATGAGGATGATGACGATGCAGGGGATGTGTTAATCTATACGGGTCATGGTGGGCAAGATAAGTTTTCATCAAAGCAATCTACTCACCAGAAGCTAGAAGGGGGGAATCTAGCTTTGGAGAGAAGTATGCATTATCAGATTGAAGTGAGGGTTATTAGGGGGATTAAGCACCCAGGCAGTTTTACTAACAAAGTTTATGTCTATGATGGTTTATATCGGATCCTTGACTGTTGGTTTGATGTGGGCAAGTCCGGTTTTGGTGTTTATAAGTATAAGCTGGTCAGGATTGAAGGTCAACCTGAAATGGGTAGTGCTGTTTTGAAATTTGCAGAGAGACTTAGAACAAACCCTTTGTCTGTTAGGCCAATGGGATATCTCAGTCTTGATATTTCAGTGAAGAAGGAGAACATTCCGGTCCTTCTTTTTAACGACATTGATAATGATCAGGAGCCATTATTTTATGACTATCTTCTTAGGACTGTTTTTCCGCCTTTTGCGTTTCACCAATCTGGCAATGGTACTGGTTGTGACTGTATATCTGGCTGTGTTGATGATTGCTTTTGTGCTATGAAAAATGGGGGGGAGTTTGCTTATGATCATAATGGATTTCTCATCAGAGGGAAACCTGTAGTTTTCGAATGTGGGCCTTTCTGTCAGTGTCCCCCACACTGTCGAAATCGGGTTTCACAAAAAGGGATAAAACATAGGCTTGAAGTGTTTAGGTCAAGAGAAACAGGATGGGGTGTTAGGTCTTTAGACTTGATTCATGCTGGTTCATTTATATGTGAATATTCAGGGGTTATTCTTACCATGGATCAAGCCAATGTTCTATCTATGAATGGGGATGCATTGGTTCGTCCCAATCGATTTTCGGATAGGTGGGCAGAATGGGGTGATCTAACTCAAATAGATTCCAACTATGTTAGACCATCTTACCCTTGTGTTCCTCCATTTGATTTTGCAATGGATGTTTCAAAAATGAGGAATGTTGCTTGTTATATAAGCCATAGTACGGTCCCAAATGTGTTGGTCCAGTTTGTTTTATATGATCATAATAATCTTATGTTCCCTCACTTGATGTTGTTTGCAATGGAAACCGTCCCTCCGTTGAGAGAGCTTAGCCTTGACTATGGTGTTGCTGACGAATGGGTGGGAAAGCTCTCGATTTGTAACTGA 2058 44.17 MGSTIPVPVLDLNLLPDPPASFENNKNSYSFKIPKIEPKHEPFDEAPLQTPQPPQQTPQPLQSFLSDPSPNIFSHSPVTPPPLPEQNLTSFSQPSNISFSDVDNVHSEFNRIKELFNTAFPKRLENYLCEDELDHESGAIVPVPVPPENQVSTTVVARRKYPKRSSELVRVTDLSVDDQRYFRDVVRRTRMIFDSLRILTLVEVEKRRDSGLSRRLRGDLVASSVLRERGLWLNRDKRIVGSIPGVYIGDLFLFRMELCVVGLHGQTQAGIDYVPASQSSNGEPIATSIIVSGGYEDDDDAGDVLIYTGHGGQDKFSSKQSTHQKLEGGNLALERSMHYQIEVRVIRGIKHPGSFTNKVYVYDGLYRILDCWFDVGKSGFGVYKYKLVRIEGQPEMGSAVLKFAERLRTNPLSVRPMGYLSLDISVKKENIPVLLFNDIDNDQEPLFYDYLLRTVFPPFAFHQSGNGTGCDCISGCVDDCFCAMKNGGEFAYDHNGFLIRGKPVVFECGPFCQCPPHCRNRVSQKGIKHRLEVFRSRETGWGVRSLDLIHAGSFICEYSGVILTMDQANVLSMNGDALVRPNRFSDRWAEWGDLTQIDSNYVRPSYPCVPPFDFAMDVSKMRNVACYISHSTVPNVLVQFVLYDHNNLMFPHLMLFAMETVPPLRELSLDYGVADEWVGKLSICN 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1542641 1545716 - Conep07aG0036400.1 Cone7ag0355 440951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0355 685 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 223 406 - -
Cone7ag0355 685 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 64 685 IPR025794 GO:0042054(InterPro)
Cone7ag0355 685 Pfam SAD/SRA domain 240 393 IPR003105 -
Cone7ag0355 685 Pfam Pre-SET motif 427 521 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone7ag0355 685 SMART G9a_1 236 393 IPR003105 -
Cone7ag0355 685 MobiDBLite consensus disorder prediction 59 73 - -
Cone7ag0355 685 ProSiteProfiles SET domain profile. 529 672 IPR001214 GO:0005515(InterPro)
Cone7ag0355 685 SMART set_7 529 678 IPR001214 GO:0005515(InterPro)
Cone7ag0355 685 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 71 673 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Cone7ag0355 685 ProSiteProfiles YDG domain profile. 241 389 IPR003105 -
Cone7ag0355 685 SMART preset_2 421 513 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone7ag0355 685 ProSiteProfiles Pre-SET domain profile. 468 526 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone7ag0355 685 SUPERFAMILY PUA domain-like 224 402 IPR015947 -
Cone7ag0355 685 SUPERFAMILY SET domain 412 675 IPR046341 -
Cone7ag0355 685 Gene3D - 238 397 IPR036987 -
Cone7ag0355 685 MobiDBLite consensus disorder prediction 1 94 - -
Cone7ag0355 685 Pfam SET domain 540 672 IPR001214 GO:0005515(InterPro)
Cone7ag0355 685 Gene3D SET domain 398 685 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0355 K11420 - - csv:101222210 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0268 Cone-Chr13:1878840 Cone7ag0355 Cone-Chr7:1542641 4.16E-18 dispersed
Cone14ag0190 Cone-Chr14:866373 Cone7ag0355 Cone-Chr7:1542641 7.10E-16 dispersed
Cone19ag0252 Cone-Chr19:1667868 Cone7ag0355 Cone-Chr7:1542641 4.45E-19 dispersed
Cone6ag0634 Cone-Chr6:3210666 Cone7ag0355 Cone-Chr7:1542641 1.16E-109 dispersed
Cone7ag0355 Cone-Chr7:1542641 Cone9ag0638 Cone-Chr9:3043669 4.12E-76 dispersed
Cone14ag0189 Cone-Chr14:864936 Cone7ag0355 Cone-Chr7:1542641 8.61E-270 wgd
Cone18ag0798 Cone-Chr18:4694881 Cone7ag0355 Cone-Chr7:1542641 1.06E-14 wgd
Cone4ag0368 Cone-Chr4:1667169 Cone7ag0355 Cone-Chr7:1542641 0 wgd
Cone5ag0562 Cone-Chr5:2398772 Cone7ag0355 Cone-Chr7:1542641 1.65E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46461 PF00069 Pkinase 5.30E-40 CL0016 Cone TR