Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0360 ATGGCGGCTTCGTCCTGCTCGGACCAACTGGCACAGTTCTTCGGCCCAAACACCACCAACCCAATCGAAGCGGCGACCTACATCTGTTCGCAGTTCACTACCATCGCTACCAACTTCAGCGATACCCAACATGCCGTCGACACTACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGGTTCGCCATGCTCTGTGCCGGCTCAGTCCGAGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCACAGCCGGTGGTCTCTTCTACTACCTTTTTGGCTACGCCTTCGCCTTTGGCTCGCCTTCTAACGGCTTCATCGGCCGTCATTTCTTCGCCCTCAAAGATTTCCCTTCTGACTCCGCCGATTACAGCGTTTTCCTCTACCAGTGGGCATTTGCCATCGCCGCCGCCGGAATCACCAGCGGCTCAATCGCCGAGCGGACCCAATTCGTGGCTTATTTGATATACTCTTCATTCCTGACCGGATTCGTTTACCCGGTAGTTTCTCACTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCTCTGAGATCCGACGGAGACCTTTTGTTCAGAACTGGAGTTATCGACTTTGCCGGATCCGGTGTGGTACATATGGTTGGAGGCATTGCCGGGTTATGGGGAGCCTTAATCGAAGGCCCGAGAATAGGCCGGTTTGATCATTCGGGCCGATCCGTTGCGCTACGTGGCCACAGTGCTTCTTTGGTTGTGCTCGGAACGTTCATGCTTTGGTTCGGGTGGTACGGGTTCAATCCCGGTTCCTTCACGAAAATTCTCGTCCCGTACACTTCCGGAAACTACTACGGGCAGTGGAGCGCCATCGGACGGACAGCTGTTACCACCACACTAGCAGGCTCCACAGCGGCTCTGACCACCTTGTTTGGCAAAAGGATACTCTCGGGTCATTGGAACGTAACCGACGTGTGTAACGGGCTACTCGGCGGGTTTGCGGCAATAACTTCCGGGTGCTCAGTTGTCGAGCCGTGGGCTGCGATCGTATGCGGGTTCGTAGCATCGATCGTGTTGATCAGTTGCAACAAGCTAGCTGAGAAGGTCAGGTATGACGACCCTCTAGAGGCAGCACAGCTACACGGAGGGTGTGGAGCATGGGGGATAATATTTACGGCCCTGTTTGCGACGGAGAAGTACGTGAATGAGGTGTATCCGGGGAAACCGGGCCGCCCATACGGGTTGTTTATGGGGGGTGGTGGAAGGTTACTAGGGGCCCATTTGATCCAAATCTTGGTGATTGTGGGGTGGGTCAGTGCCACAATGGGCACCTTGTTTTATGTGCTCCATAAACTAAAGCTTTTGAGGATATCAGCTGAGGATGAAATGGCGGGTATGGATATAACCCGGCATGGAGGAATGGCTTATTTTTACCATGATGAAGATAGCTCCGATAAGCCTCCCATGATCCAGTTGAGGAAGATTGAACCAAATTCAACCGCTCCAACTACAATTTAG 1506 53.85 MAASSCSDQLAQFFGPNTTNPIEAATYICSQFTTIATNFSDTQHAVDTTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDATAGGLFYYLFGYAFAFGSPSNGFIGRHFFALKDFPSDSADYSVFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASALRSDGDLLFRTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTSGNYYGQWSAIGRTAVTTTLAGSTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAIVCGFVASIVLISCNKLAEKVRYDDPLEAAQLHGGCGAWGIIFTALFATEKYVNEVYPGKPGRPYGLFMGGGGRLLGAHLIQILVIVGWVSATMGTLFYVLHKLKLLRISAEDEMAGMDITRHGGMAYFYHDEDSSDKPPMIQLRKIEPNSTAPTTI 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1565355 1566994 + Conep07aG0036900.1 Cone7ag0360 440956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0360 501 PANTHER AMMONIUM TRANSPORTER 27 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cone7ag0360 501 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone7ag0360 501 Gene3D Ammonium transporter AmtB like domains 25 491 IPR029020 -
Cone7ag0360 501 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone7ag0360 501 SUPERFAMILY Ammonium transporter 44 453 - -
Cone7ag0360 501 FunFam Ammonium transporter 28 486 - -
Cone7ag0360 501 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0630 Cone-Chr10:3005138 Cone7ag0360 Cone-Chr7:1565355 9.81E-267 transposed
Cone1ag0573 Cone-Chr1:5801865 Cone7ag0360 Cone-Chr7:1565355 6.81E-202 transposed
Cone4ag0373 Cone-Chr4:1686595 Cone7ag0360 Cone-Chr7:1565355 1.90e-311 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0360 K03320 - csv:101212168 811.986