Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0370 | ATGGCAATGGCGGTTTCTGCAGGAAGGAAATGGTTTGGTTTGTGTCTGGCGCTGCTCGTAATGTTGCTCGCCGGAACAATGTTGGCCAGAGTTTCCAAGGATCAGATATCTGAAACTTGGAATGAGGTAATAGAAAAGTTCCAGAGCTCAGCAAACTCAACAATGGTGGCGAGGCTGGAAGAAGAAGTGACTGGTGTGAGACTGAACACTGACCATCATGAGTTGGACGACCCAGAAGAGATTGCTGCCATGGTTGAAACGAGCATTCGGAATAGCACAGAAAGAAGAAAGCTGGGTTACTTCTCATGTGGGACCGGCAATCCAATTGATGACTGTTGGCGTTGTGATCCCAACTGGCACAAAAACCGAAAGCGCCTTGCCGATTGCGGGATCGGTTTTGGCCGAAATGCAGTTGGCGGGCGTGACGGCCATTTTTACGTCGTAACTGATTCAAGCGACCATGACCCTGTCAACCCCAAACCCGGAACTCTCCGCCATGCTGTTATTCAAGACAGACCACTGTGGATTGTGTTCAAACGAGACATGGTGATACAGTTGAAACAGGAGCTGATCATGAACAGTTTCAAGACCATTGATGGTCGTGGGGTCAATGTCCACATTGCGAATGGTGCATGTATCACAATCCAGTATGTTACTAATGTGATCATCCATGGTTTGCATGTACATGACTGTAAGCCGACTGGGAATGCTATGGTGAGAAGCTCGCCTAGTCACTTTGGGTGGAGGACTATGGCTGATGGGGATGCTATCTCCATTTTTGGGTCTAGTCATATTTGGGTCGATCATAACTCCCTTTCTAATTGTGCTGATGGGCTTGTTGATGCTGTGATGGGGTCCACTGCAATTACCATTTCAAACAATCACTTTACTCATCACAATGAGGTGATGCTGTTGGGACACAGTGATTCTTATACAAAGGACAAACAAATGCAAGTCACCATTGCCTACAACCATTTTGGTGAGGGTCTGATTCAGAGAATGCCGAGATGTAGACATGGGTATTTCCATGTGGTGAACAACGACTACACTCACTGGGAAATGTATGCAATCGGTGGGAGTGCAAACCCCACCATCAATAGCCAGGGAAATAGATATGCTGCTCCAGCCAACCCATTTGCAAAAGAGGTGACAAAGAGAGTGGAAACAGCTGCAAGTGAGTGGAAGGGGTGGAATTGGAGATCAGAGGGAGATATGCTGGTGAACGGTGCTTACTTCACCCCATCTGGTGCTGGAGCTTCATCTAGTTATGCTAGGGCTTCGAGCTTGGGAGCTAAGTCTTCATCAATGGTGGCTACTATTACTTCTGGTGCTGGTGTTCTTGGTTGCCGCAGAGGCCATCCTTGCTAG | 1368 | 47.73 | MAMAVSAGRKWFGLCLALLVMLLAGTMLARVSKDQISETWNEVIEKFQSSANSTMVARLEEEVTGVRLNTDHHELDDPEEIAAMVETSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAVGGRDGHFYVVTDSSDHDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHVHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPANPFAKEVTKRVETAASEWKGWNWRSEGDMLVNGAYFTPSGAGASSSYARASSLGAKSSSMVATITSGAGVLGCRRGHPC | 455 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1620380 | 1624059 | - | Conep07aG0037900.1 | Cone7ag0370 | 440966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0370 | 455 | FunFam | Pectate lyase | 106 | 448 | - | - | |
| Cone7ag0370 | 455 | Pfam | Pectate lyase | 188 | 370 | IPR002022 | - | |
| Cone7ag0370 | 455 | SUPERFAMILY | Pectin lyase-like | 83 | 449 | IPR011050 | - | |
| Cone7ag0370 | 455 | Gene3D | - | 106 | 448 | IPR012334 | - | |
| Cone7ag0370 | 455 | SMART | amb_all | 181 | 378 | IPR002022 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 355 | 374 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 426 | 449 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 189 | 205 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 333 | 352 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 129 | 146 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 253 | 274 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 397 | 421 | IPR018082 | - | |
| Cone7ag0370 | 455 | PRINTS | Pollen allergen Amb family signature | 153 | 178 | IPR018082 | - | |
| Cone7ag0370 | 455 | PANTHER | PECTATE LYASE 18-RELATED | 26 | 452 | IPR045032 | GO:0030570(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0056 | Cone-Chr16:296641 | Cone7ag0370 | Cone-Chr7:1620380 | 1.13E-216 | dispersed | |
| Cone16ag0862 | Cone-Chr16:9144206 | Cone7ag0370 | Cone-Chr7:1620380 | 8.39E-149 | dispersed | |
| Cone18ag0538 | Cone-Chr18:2654646 | Cone7ag0370 | Cone-Chr7:1620380 | 7.12E-182 | dispersed | |
| Cone18ag1333 | Cone-Chr18:9223112 | Cone7ag0370 | Cone-Chr7:1620380 | 3.06E-163 | dispersed | |
| Cone3ag0244 | Cone-Chr3:1304395 | Cone7ag0370 | Cone-Chr7:1620380 | 4.34E-186 | dispersed | |
| Cone5ag0370 | Cone-Chr5:1575229 | Cone7ag0370 | Cone-Chr7:1620380 | 2.01E-186 | dispersed | |
| Cone5ag1260 | Cone-Chr5:6004920 | Cone7ag0370 | Cone-Chr7:1620380 | 1.26E-56 | dispersed | |
| Cone7ag0370 | Cone-Chr7:1620380 | Cone8ag0710 | Cone-Chr8:7123264 | 1.75E-202 | dispersed | |
| Cone14ag0210 | Cone-Chr14:975609 | Cone7ag0370 | Cone-Chr7:1620380 | 1.30E-269 | wgd | |
| Cone15ag0231 | Cone-Chr15:1079114 | Cone7ag0370 | Cone-Chr7:1620380 | 1.68E-265 | wgd | |
| Cone4ag0383 | Cone-Chr4:1736681 | Cone7ag0370 | Cone-Chr7:1620380 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0370 | K01728 | - | csv:101217580 | 764.607 |