Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0388 ATGACTCATATTGCTGTTGAGAGGAATAGAAGAAAGCAAATGAATGAGCATCTCCGCGTCTTGAGGTCCCTCATGCCGGGTTCTTACGTTCAAAGAGGCGATCAGGCTTCGATAATAGGTGGGGCAATTGAGTTTTTAAGAGAATTGGAGCAACTTCTTCAATGCTTAGAATCACAAAAGCGTAGGAGACTACTAGGAACCGATCAATCCTCAAGACAAGTAGTAGGAGATTCATCCAACATGGCAATTCAACTGCTACCGCCACCACAACCACCGTTCATGCCGCTTCCCGAAGATCAGATGATGAGGCCGATCAGTATGGAATTTGAAACTGGCTTGTCCGGTGGGGCTGGGATAAGAGAAGAAACGGCCGAGAACAAGTCGTGCTTGGCGGATGTCGAAGTGAAGCTTCTAGGGTTTGATGCAATGATCAAAGTTCTTTCTAGAAGAAGAGCAGGGCAGCTTGTGAAAACCATTGCTGCGCTAGAGGATTTGCAGCTTAACATTCTTCATACTAACATCACCACCATTGAACAAACAGTACTTTATTCATTTAACGTCAAGGTCGGGAGTGAATCGAGATTTACGGAAGAAGATATAACCAGCTCAGTTCAACAGATGTTTAATTTTATTCATACAAGTAACAACTAA 651 43.63 MTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFLRELEQLLQCLESQKRRRLLGTDQSSRQVVGDSSNMAIQLLPPPQPPFMPLPEDQMMRPISMEFETGLSGGAGIREETAENKSCLADVEVKLLGFDAMIKVLSRRRAGQLVKTIAALEDLQLNILHTNITTIEQTVLYSFNVKVGSESRFTEEDITSSVQQMFNFIHTSNN 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1711919 1714084 + Conep07aG0039700.1 Cone7ag0388 440984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0388 216 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
Cone7ag0388 216 PANTHER TRANSCRIPTION FACTOR FAMA 1 210 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone7ag0388 216 CDD bHLH_AtFAMA_like 1 74 - -
Cone7ag0388 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Cone7ag0388 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 72 IPR036638 GO:0046983(InterPro)
Cone7ag0388 216 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Cone7ag0388 216 Gene3D - 1 71 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0651 Cone-Chr5:2784451 Cone7ag0388 Cone-Chr7:1711919 1.42E-21 dispersed
Cone7ag0217 Cone-Chr7:935531 Cone7ag0388 Cone-Chr7:1711919 3.38E-32 dispersed
Cone7ag0388 Cone-Chr7:1711919 Cone7ag1260 Cone-Chr7:9361322 1.71E-35 dispersed
Cone4ag0399 Cone-Chr4:1815296 Cone7ag0388 Cone-Chr7:1711919 1.35E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46465 PF00847 AP2 5.90E-16 CL0081 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0388 K26213 - rcu:8280676 296.589