Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0390 ATGTACTCAGCTATTCACTCGCTTCCGCTTGATGGGAGTAGTGTGGTTGGGCACAGCAACTTTCATGGATCTCTAGATGGAATTTCCACCTTACCCGGCGACGCTTGTCTGGTCCTCACTTCCGATCCCAAGCCCCGACTCCGGTGGACGGCGGAGCTCCATGAGAGATTCGTCGACGCCGTCACCCAGCTCGGTGGCCCTGATAAAGCAACGCCGAAGACTATTATGAGAACCATGGGAGTAAAAGGTTTGACCCTTTATCACTTGAAATCACACCTCCAGAAATACAGGTTGGGGAAGCAATCGTTCAGGGACTCAACCGAAAACTCAAAAGAGGCTTCTTGCATCGCAGAAAGTCAAGAAACCAGCTCGTCATCATCCCCATCATCTAGAATGATTGCACAAGATCTTAACAATGGTTACCAAGTCACAGAGGCTTTACGGTTACAAATGGAAGTCCAGAGAAGATTGCACGAACAACTTGAGGTTCAGCGTCGGCTCCAAGTACGGATCGAAGCACAAGGAAAATACCTTCAATCAATACTCGAGAAAGCTTGTCAAGCTCTAAGTGACCAGGCTTTAACATCGGCCAGGATTGAAGCAGCCCGAGAAGAGCTATCAGGCCTGGAAATCAAGGTTCCAAGTGGCTATCAAGGAATGGGCCTGAGTTCAATTGAAGGTGTGAAAACTACCCCCCTATCAGAACTTGCTGTGGCTCTTGGAAACAGGAATTATGCTACTACGAATATACCCGCTAGGATTGGGGATTGCTCGGTGGATAGTTGCTTGACATCAAGCGGGAGTCCGGTTTCACATGTTGGTGAAGTGAAGAAGAGATCGAGGGGGCCCGTGTTTGGAAATGGAGATACTATCCCATCTTTGAAAAGCAATTTGCGGCAGGAAGTTGAATGGATGATGACTAATATTGGATGA 933 48.12 MYSAIHSLPLDGSSVVGHSNFHGSLDGISTLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFRDSTENSKEASCIAESQETSSSSSPSSRMIAQDLNNGYQVTEALRLQMEVQRRLHEQLEVQRRLQVRIEAQGKYLQSILEKACQALSDQALTSARIEAAREELSGLEIKVPSGYQGMGLSSIEGVKTTPLSELAVALGNRNYATTNIPARIGDCSVDSCLTSSGSPVSHVGEVKKRSRGPVFGNGDTIPSLKSNLRQEVEWMMTNIG 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1718930 1721356 + Conep07aG0039900.1 Cone7ag0390 440986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0390 310 Pfam MYB-CC type transfactor, LHEQLE motif 142 187 IPR025756 -
Cone7ag0390 310 FunFam Myb family transcription factor 43 101 - -
Cone7ag0390 310 SUPERFAMILY Homeodomain-like 44 101 IPR009057 -
Cone7ag0390 310 MobiDBLite consensus disorder prediction 109 132 - -
Cone7ag0390 310 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
Cone7ag0390 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677(InterPro)
Cone7ag0390 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Cone7ag0390 310 Gene3D - 43 102 - -
Cone7ag0390 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 279 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1779 Cone-Chr5:12629516 Cone7ag0390 Cone-Chr7:1718930 5.15E-31 dispersed
Cone5ag1780 Cone-Chr5:12633936 Cone7ag0390 Cone-Chr7:1718930 5.03E-48 dispersed
Cone6ag0578 Cone-Chr6:2827842 Cone7ag0390 Cone-Chr7:1718930 2.85E-33 dispersed
Cone7ag0390 Cone-Chr7:1718930 Cone8ag1607 Cone-Chr8:11908305 1.29E-48 dispersed
Cone12ag0518 Cone-Chr12:3547407 Cone7ag0390 Cone-Chr7:1718930 2.23E-43 transposed
Cone4ag0401 Cone-Chr4:1822889 Cone7ag0390 Cone-Chr7:1718930 1.08E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46466 PF00149 Metallophos 7.10E-41 CL0163 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0390 - - - 0.0