Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0393 ATGTTGAACAGAGAAGATAAAATGGCGATGAGAGAAGCTACATCTTCATCAAACTATTATGTATACCCACAACCACTTGCAAAATATGATGACATTGTGTCAAATCCTGAGCTTTTCATGGCTTCTCTTGAGAAGCTTCATGCTTCAATGGGAACCAAGTTCATGATACCAATTATAGGGGGCAAAGACCTAGACTTGCATAAGCTTTTCGTGGAAGTTACTTCGCGTGGCGGAATCGGGAAGATTATTAGAGAAAGAAGATGGAAAGAAGTGACGGCTGTTTTTAACTTCCCCTCAACAGCTACAAATGCATCTTTTGTGCTCCGAAAATACTATACTTCATTACTTCACCACTATGAACAAATGTACTACTTCAAAGCTCAAGGATGGACCCCTACCTCGGCCGATTCTTTGGCAATTCCGAACTCGGGAATGAATCTGTCTCAGTGGACCCAACCATCTCGGCCCTTGCCCTTTGTTCAAGCTACTAACATGCAGCAGCAACCCACAGAATCTTCAGCGGCAAGGCCGGCATCATTGGCAGGATGTCTGTTAACGGGGGTAATTGACGGGAAATTCGACAGTGGTTATCTCGTAACCGTCCTCCTAGGCTCGGAGGAACTAAAGGGTGTTCTTTATGAAATGCCTTGTAACCCGACTCAACAAGTAACTACAACACAACCACCATTTGTCCTCTTTGCCAACACCAAAGAAACTGTCTCAACAACTCCTACTACTACCACTCGTCTTCCTCGCCGCCGCCGCCGGAAAAAGTCCGAGATAAAACGGCGGGACCCGGCTCATCCAAAACCGAACAGAAGCGGTTATAACTTCTTCTTTGCCGAGCAGCATGCCAGACTCAAACTGCTACACCCTGGTAAAGATAGAGAGATTAGTAGAATGATAGGCGAGCTATGGAACAATCTAACCGACTTAGAGAAAACGGTTTATCAAGAGAAAGCAGCTAAGGATAAAGAGAGGTATAGGACCGAGATGGAAGACTATAGGGAGAGGTTAAGGACAGGACAAGTGGTGAGGGATGCCATGCCTATACAACAAAGGATTCCATACACAGATTTGAATTTGGTTGAAGCTGATGTTAAGAAGGAAGATGAAGCTAAGAGCTTGGATTCTGTTATGCAAACACCCGAGAATGAGAGTAGTACTAGTAAGAGTGATTCCGATGATAATGATCTGACGATTGAGAAGGATTTGGTCAATGCTGATGTATCGGATGGATTGACTTTAGGCTTAGGAGTGGGCCCTGAAATGAGCAATGTGGATGTCTTTGTGCCGGTTAAGGATGCTGGAGAGAAAGTTGGAGAGCACATTAATGAGAAGATTGGTGAGGAGGAGAGGTTACAACAAGGGCTTGGCAGCAATAATGCATCTGGCGGCAGTGTTGAAGAACACTTGGAGGAATCTCTTTGA 1431 44.79 MLNREDKMAMREATSSSNYYVYPQPLAKYDDIVSNPELFMASLEKLHASMGTKFMIPIIGGKDLDLHKLFVEVTSRGGIGKIIRERRWKEVTAVFNFPSTATNASFVLRKYYTSLLHHYEQMYYFKAQGWTPTSADSLAIPNSGMNLSQWTQPSRPLPFVQATNMQQQPTESSAARPASLAGCLLTGVIDGKFDSGYLVTVLLGSEELKGVLYEMPCNPTQQVTTTQPPFVLFANTKETVSTTPTTTTRLPRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHPGKDREISRMIGELWNNLTDLEKTVYQEKAAKDKERYRTEMEDYRERLRTGQVVRDAMPIQQRIPYTDLNLVEADVKKEDEAKSLDSVMQTPENESSTSKSDSDDNDLTIEKDLVNADVSDGLTLGLGVGPEMSNVDVFVPVKDAGEKVGEHINEKIGEEERLQQGLGSNNASGGSVEEHLEESL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1752040 1754782 + Conep07aG0040200.1 Cone7ag0393 440989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0393 476 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677(InterPro)
Cone7ag0393 476 Gene3D - 24 134 IPR036431 GO:0003677(InterPro)
Cone7ag0393 476 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677(InterPro)
Cone7ag0393 476 FunFam High mobility group B protein 15 27 140 - -
Cone7ag0393 476 SUPERFAMILY HMG-box 262 341 IPR036910 -
Cone7ag0393 476 Pfam ARID/BRIGHT DNA binding domain 36 120 IPR001606 GO:0003677(InterPro)
Cone7ag0393 476 CDD HMG-box_AtHMGB9-like 269 335 - -
Cone7ag0393 476 SMART ARID_2 30 120 - -
Cone7ag0393 476 SMART bright_3 34 125 IPR001606 GO:0003677(InterPro)
Cone7ag0393 476 SUPERFAMILY ARID-like 32 134 IPR036431 GO:0003677(InterPro)
Cone7ag0393 476 MobiDBLite consensus disorder prediction 372 398 - -
Cone7ag0393 476 MobiDBLite consensus disorder prediction 249 263 - -
Cone7ag0393 476 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 391 - -
Cone7ag0393 476 Coils Coil 318 338 - -
Cone7ag0393 476 FunFam High mobility group B protein 15 251 346 - -
Cone7ag0393 476 MobiDBLite consensus disorder prediction 450 476 - -
Cone7ag0393 476 SMART hmgende2 268 337 IPR009071 -
Cone7ag0393 476 MobiDBLite consensus disorder prediction 239 275 - -
Cone7ag0393 476 Pfam HMG (high mobility group) box 269 336 IPR009071 -
Cone7ag0393 476 Gene3D High mobility group box domain 252 346 IPR036910 -
Cone7ag0393 476 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 269 336 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0393 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1272 Cone-Chr14:10172910 Cone7ag0393 Cone-Chr7:1752040 7.02E-67 dispersed
Cone4ag1987 Cone-Chr4:13923663 Cone7ag0393 Cone-Chr7:1752040 4.02E-78 dispersed
Cone7ag0393 Cone-Chr7:1752040 Cone7ag1916 Cone-Chr7:12263604 7.00E-78 dispersed
Cone4ag0406 Cone-Chr4:1842806 Cone7ag0393 Cone-Chr7:1752040 3.62E-261 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46467 PF00083 Sugar_tr 7.00E-52 CL0015 Cone TR