Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0393 ATGTTGAACAGAGAAGATAAAATGGCGATGAGAGAAGCTACATCTTCATCAAACTATTATGTATACCCACAACCACTTGCAAAATATGATGACATTGTGTCAAATCCTGAGCTTTTCATGGCTTCTCTTGAGAAGCTTCATGCTTCAATGGGAACCAAGTTCATGATACCAATTATAGGGGGCAAAGACCTAGACTTGCATAAGCTTTTCGTGGAAGTTACTTCGCGTGGCGGAATCGGGAAGATTATTAGAGAAAGAAGATGGAAAGAAGTGACGGCTGTTTTTAACTTCCCCTCAACAGCTACAAATGCATCTTTTGTGCTCCGAAAATACTATACTTCATTACTTCACCACTATGAACAAATGTACTACTTCAAAGCTCAAGGATGGACCCCTACCTCGGCCGATTCTTTGGCAATTCCGAACTCGGGAATGAATCTGTCTCAGTGGACCCAACCATCTCGGCCCTTGCCCTTTGTTCAAGCTACTAACATGCAGCAGCAACCCACAGAATCTTCAGCGGCAAGGCCGGCATCATTGGCAGGATGTCTGTTAACGGGGGTAATTGACGGGAAATTCGACAGTGGTTATCTCGTAACCGTCCTCCTAGGCTCGGAGGAACTAAAGGGTGTTCTTTATGAAATGCCTTGTAACCCGACTCAACAAGTAACTACAACACAACCACCATTTGTCCTCTTTGCCAACACCAAAGAAACTGTCTCAACAACTCCTACTACTACCACTCGTCTTCCTCGCCGCCGCCGCCGGAAAAAGTCCGAGATAAAACGGCGGGACCCGGCTCATCCAAAACCGAACAGAAGCGGTTATAACTTCTTCTTTGCCGAGCAGCATGCCAGACTCAAACTGCTACACCCTGGTAAAGATAGAGAGATTAGTAGAATGATAGGCGAGCTATGGAACAATCTAACCGACTTAGAGAAAACGGTTTATCAAGAGAAAGCAGCTAAGGATAAAGAGAGGTATAGGACCGAGATGGAAGACTATAGGGAGAGGTTAAGGACAGGACAAGTGGTGAGGGATGCCATGCCTATACAACAAAGGATTCCATACACAGATTTGAATTTGGTTGAAGCTGATGTTAAGAAGGAAGATGAAGCTAAGAGCTTGGATTCTGTTATGCAAACACCCGAGAATGAGAGTAGTACTAGTAAGAGTGATTCCGATGATAATGATCTGACGATTGAGAAGGATTTGGTCAATGCTGATGTATCGGATGGATTGACTTTAGGCTTAGGAGTGGGCCCTGAAATGAGCAATGTGGATGTCTTTGTGCCGGTTAAGGATGCTGGAGAGAAAGTTGGAGAGCACATTAATGAGAAGATTGGTGAGGAGGAGAGGTTACAACAAGGGCTTGGCAGCAATAATGCATCTGGCGGCAGTGTTGAAGAACACTTGGAGGAATCTCTTTGA 1431 44.79 MLNREDKMAMREATSSSNYYVYPQPLAKYDDIVSNPELFMASLEKLHASMGTKFMIPIIGGKDLDLHKLFVEVTSRGGIGKIIRERRWKEVTAVFNFPSTATNASFVLRKYYTSLLHHYEQMYYFKAQGWTPTSADSLAIPNSGMNLSQWTQPSRPLPFVQATNMQQQPTESSAARPASLAGCLLTGVIDGKFDSGYLVTVLLGSEELKGVLYEMPCNPTQQVTTTQPPFVLFANTKETVSTTPTTTTRLPRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHPGKDREISRMIGELWNNLTDLEKTVYQEKAAKDKERYRTEMEDYRERLRTGQVVRDAMPIQQRIPYTDLNLVEADVKKEDEAKSLDSVMQTPENESSTSKSDSDDNDLTIEKDLVNADVSDGLTLGLGVGPEMSNVDVFVPVKDAGEKVGEHINEKIGEEERLQQGLGSNNASGGSVEEHLEESL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1752040 1754782 + Conep07aG0040200.1 Cone7ag0393 440989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0393 476 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677(InterPro)
Cone7ag0393 476 Gene3D - 24 134 IPR036431 GO:0003677(InterPro)
Cone7ag0393 476 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677(InterPro)
Cone7ag0393 476 FunFam High mobility group B protein 15 27 140 - -
Cone7ag0393 476 SUPERFAMILY HMG-box 262 341 IPR036910 -
Cone7ag0393 476 Pfam ARID/BRIGHT DNA binding domain 36 120 IPR001606 GO:0003677(InterPro)
Cone7ag0393 476 CDD HMG-box_AtHMGB9-like 269 335 - -
Cone7ag0393 476 SMART ARID_2 30 120 - -
Cone7ag0393 476 SMART bright_3 34 125 IPR001606 GO:0003677(InterPro)
Cone7ag0393 476 SUPERFAMILY ARID-like 32 134 IPR036431 GO:0003677(InterPro)
Cone7ag0393 476 MobiDBLite consensus disorder prediction 372 398 - -
Cone7ag0393 476 MobiDBLite consensus disorder prediction 249 263 - -
Cone7ag0393 476 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 391 - -
Cone7ag0393 476 Coils Coil 318 338 - -
Cone7ag0393 476 FunFam High mobility group B protein 15 251 346 - -
Cone7ag0393 476 MobiDBLite consensus disorder prediction 450 476 - -
Cone7ag0393 476 SMART hmgende2 268 337 IPR009071 -
Cone7ag0393 476 MobiDBLite consensus disorder prediction 239 275 - -
Cone7ag0393 476 Pfam HMG (high mobility group) box 269 336 IPR009071 -
Cone7ag0393 476 Gene3D High mobility group box domain 252 346 IPR036910 -
Cone7ag0393 476 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 269 336 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1272 Cone-Chr14:10172910 Cone7ag0393 Cone-Chr7:1752040 7.02E-67 dispersed
Cone4ag1987 Cone-Chr4:13923663 Cone7ag0393 Cone-Chr7:1752040 4.02E-78 dispersed
Cone7ag0393 Cone-Chr7:1752040 Cone7ag1916 Cone-Chr7:12263604 7.00E-78 dispersed
Cone4ag0406 Cone-Chr4:1842806 Cone7ag0393 Cone-Chr7:1752040 3.62E-261 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46467 PF00083 Sugar_tr 7.00E-52 CL0015 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0393 - - - 0.0