Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0394 ATGGAAGACCAAGTTCCCAACAGGGAAAACTTTGTAGGAAACGAATTTCCATGTTTTTTCAAAGATACCATTTCGCAACCGAGTCCTTTCGGAAATGCTAACGGATCAAAGCTGCCATCATCTTTGATCAAAGATGTCATGGAAGAACATGATGGAAGTTTCAATCTTCCACTAAACTTCTTGGAATCATTTCCAACACTAAGCCAAGGTCAATTTCCTAAATCTCATTCAAATCCAAACCCTCCAAACTTGACCCTACTGTTACAACAACCCCCAATCCCGGTGTCTCGACCGATGACATCACCCCACCTCGGCCCACATTCAAAATCACAGCTGTCGAGAAATGTGGGCCGGAGAGCGCAAGATAAGAATCGTGCGGCTCATACATCATTATCATCATCGACATCAATGTTGAATCCCGGAAAGCTATTCCGAGGAGTGAGGCAAAGGCAATGGGGCAAATGGGTAGCGGAAATAAGATTGCCTAGAAACCGAACAAGGGTGTGGTTAGGTACTTTTGATACTGGCGAAGAGGCTGCTATTGCATATGACACGGCTGCCTATATGCTACGGGGGGAATATGCACATTTGAATTTTCCAGAGCAAAAGCATCGGATTAAGGATAATGATTCTTTGATTAAGAACACGGTCGATCTTCTCGAGACTAAGTTGAAATCAATATCACAAGGTAGTACTACTAGTAGTAGTACAAGTAGTGCTACTACTTGTGCTTATAAGAAGAAGGCTACTGACAACTCGAGTTTGAGAGCAGACGGGACCGGATTTGAGAGTATGGAGGAGAAGAAGATGGGTCAAGACGTATTGTTAGATGCTGATGGTGTTCAGTTAAGTAGACTGCCTTCTTTAGACATGGACATGATTTGGGATGCTCTTCTAGTCCCTGGTTCATGA 912 43.53 MEDQVPNRENFVGNEFPCFFKDTISQPSPFGNANGSKLPSSLIKDVMEEHDGSFNLPLNFLESFPTLSQGQFPKSHSNPNPPNLTLLLQQPPIPVSRPMTSPHLGPHSKSQLSRNVGRRAQDKNRAAHTSLSSSTSMLNPGKLFRGVRQRQWGKWVAEIRLPRNRTRVWLGTFDTGEEAAIAYDTAAYMLRGEYAHLNFPEQKHRIKDNDSLIKNTVDLLETKLKSISQGSTTSSSTSSATTCAYKKKATDNSSLRADGTGFESMEEKKMGQDVLLDADGVQLSRLPSLDMDMIWDALLVPGS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1756379 1757290 - Conep07aG0040300.1 Cone7ag0394 440990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0394 303 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677(InterPro)
Cone7ag0394 303 MobiDBLite consensus disorder prediction 92 137 - -
Cone7ag0394 303 Pfam AP2 domain 144 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 42 298 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone7ag0394 303 SMART rav1_2 143 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 Gene3D AP2/ERF domain 143 202 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 CDD AP2 142 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0394 303 FunFam Ethylene-responsive transcription factor 2 142 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0394 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0394 Cone-Chr7:1756379 Cone7ag1581 Cone-Chr7:10838004 1.56E-30 dispersed
Cone14ag0228 Cone-Chr14:1064666 Cone7ag0394 Cone-Chr7:1756379 3.51E-53 wgd
Cone15ag0246 Cone-Chr15:1160793 Cone7ag0394 Cone-Chr7:1756379 1.06E-43 wgd
Cone4ag0408 Cone-Chr4:1847318 Cone7ag0394 Cone-Chr7:1756379 1.50E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g903 . . Bda03g01124 Bda08g00035 . . . Bma05g01291 Cmo08g00995 . . . . . . . . . . . . . . . Cla06g00758 Cam06g0808 Cec06g0821 Cco06g0826 Clacu06g0810 Cmu06g0784 Cre06g1562 . . Cone7ag0394 . . . Chy05g00558 . . . . . Bpe05g01141 . . . Sed04g2065 . . Cma08g01023 . Car08g00900 . . . Bhi12g01500 Tan06g2302 Cmetu05g0661 Lac12g2046 Hepe03g0358 . Lcy13g0462 . . . . . . . Lsi09g01142 . . Cme05g00716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008409 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46468 PF00069 Pkinase 4.00E-72 CL0016 Cone TF