Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0396 ATGGGGAAAAAGGTGAAGAGGAAGGCCCAAGCTCTTCCTAAAGAGAAGCAGGCGTCAGCTAATTCTCCTAAAACCATTCTGACTCAGGACTACCCAGTTACTGTTTCAGATGTAAAAGAGAGAAAACCATGTGTTCATCTCGATAAGTGTCTCGACTTGACTGTATTGACTGAAAAAATTAGATCTTCTGAGTCTATAAGGTGTGAAGATTGTCGTGAGGGTGCTTCTGATCGGAGAAATAGCAAGGGAAAGGCTAAGAACTCTAAGATTAAAGGAGGGGGCTCAGTTGATCCAAAATCGGATTCAAATTCTGTTTGGATTTGTTTGCAATGTGGGCATTTTTCTTGTGGAGGGATTGGACTCCCAACAAACCCTCAATCACATGCTGTCCGACACAGAAGACAAACTCGCCATTCATTGGTGATCCAGTTTGAAAGACCTCAGCGTAGATGGTGTTTCTCTTGCAATTCTCTGATTCCTGTTGAAAAAGTAGAAGAGAATGGTGAAAATAAGGATGTCCTTTCTGATGTGGTGAAATTGATTAAGGAGCGTTTGGCTGAAAAACCATTGGTGGGTAATGTTGAGGATGTTTGGTTTGGAAGCAGCTCTGTAAAACCTGATGAAAGGAAATCGGAGAGTACTATATTGAGTGTTTCAGATGGAAGAGATGGATATGTAGTGAGAGGTTTGACGAATTTAGGTAACACTTGCTTCTTTAACTCAGTCTTGCAAAATATTCTAGCAATGGATAGATTGAGAGAGTGCTTGTTGAAGCCAGAAGCATCTGCTGGACCTCTTACTAATGCATTGAAGAATATCTTTGATGAATCAAGAACGGTGGGTCGAATGAAAAATGTGATAAATCCAACATCACTTTTCGGGTGCATTTCTTCCAAAGCACCCCAGTTCAAGGGGTATCAACAACATGACGGTCAGGAATTGCTCCATATCTTGCTTGATGGATTGCATAATGAAGTGTTTGGAGTGAAGAGGAGATCTAGCATGGAGGGAGAGGAAAGTTGTGAAAACCCGGGTCCCACTTTTGTTAATGAGATATTTGGGGGACAAATATCAAGTACTGTTTGTTGTATTGAATGCGGACATTCATCGACTGTTTATGAACCATTTTTAGATCTCTCTCTTTCAGTACCAACTACAAAACCTCTGGCAAAGAAGCCCCAACCAGTCTCTCGAGCAAAAAAGAAGACAAAACCGCCCCCCAAGAGAGGTGGAAGGGCTTGGACTGAAGTTAAGAAAGATGCAGCTATTGTAACAGCCCAAAGTGTTTCAGACCTTTCTGGTCCACAGTCCAGTTCTGCAGGCTCGACCTCTGAAGCTGCAGAAAGTGCCTCTACCCCACAGAATTTGTCGGATGATAGAGAATCAGGAGTGAAACAAGTTCTTGAGGATGTACGGGAACAAACTTTAGACAGTTTTGTGTGGTTGGATTACCTTGAACCAGAACCTTCATTAGAGCAAACCTCGGATACTGTGACGTGGCAGGATTACCTCGGACCAGAATCATTTTCAGATAAACTTGATGTAACATCAGAAAACAATAATAATTCTGATAACAAAGATAAATCTTCAAATGACGTCTCCTTAAAGGATAGCTTTGAGTCAAGTACCCAGATTTCTTCACTTTATAGGGAAACTGAAATGAGGCCAGACTTTTCACCGGTTAATTCTTGGGAAGATGAGCAACCATTACAGCTTCAAGAATCTGAGGTCTTGTTGCTGCCTTACAAAGAAGAAAGTTCTACCACTGAAGAAGTGAGAATGGATGATCAGGCCTCATCAACTCTGGCAGGTGGCGAAAATGATTTTGAGGGTTTTGGTGACTTATTCAATGAGCCCGAGACTGCAGCAGATCCCATTATAGGCCCAATATTAAGTAACGAAGATGCATTAGGTGGTTTTATGGCAGGAAACATCATTGACTCTGATGCAGATGAAGTTGATAATTCTGATTCTCCAGTTTCTGTAGAGAGTTGTCTGGCTTACTTCACTAAGCCCGAGCATCTCTCTGATGAAAACGGCTATAACTGTGAGAGGTGCTTGAAAAATTTGCAACAACAAAGAATGGAAATGAAGGAGAAGCAGACAAAAGCTGAATCTAGAATTTTGACAAATGGGTACCACACTGGATTCCAGAGTGACCCACCTTGTTTAGACAAGGAATCTTTCCCTACTAAAGATGGTGATCATAGTAACGGGAATACTGAAAGCGACTCCATTAGCAACAATATCGATGAAAGCTCTGTTTCACATGCAGAGAAAATCAACGGGGAAGCACAGAAAATTGAGGAAGATGTTGTGATTGGAAGGAGTCTTGGCGATAGTAATGTTGATGAGCCTAGGGGCACAGAACATGCTGCAACTAGAGTCAAGTGTCACTCATCTCCTAAATCTTTATCAGCAAAAAGTGAGGACCAGGAGATGGATTCAAAATTTACAAATGTGAAAAGGCACGCAACAAAAAGGTTCCTCATTCATAAAGCCCCACCTATTTTAACTATTCATATCAAGCGATTCCGCCCTGATGCACGTGGCTGCTATAGTAAATTGAAAGGTCATGTTTGTTTCAGAGAAATAATCAATCTCAGACCATATATGGATCCAAGGTTTGTGGACCGAGAGAAGTACAATTACCGGTTGATTGGCATCGTGGAACATTCTGGATCTATGATGGGGGGTCATTATGTTGCTTATGTGAGAGGAGGTAATAGTAAAAGGGGCGACGGAAAGGCCGAGAAAGAAAATGATGGCTCTGTGTGGTATCATGCAGATGATAGCCGAATCAAAGAGGTTTCCCTGGACCAAGTACTTAGGCAGGAGGCATACATCTTATTTTATGAAATGTTACGATGA 2871 41.73 MGKKVKRKAQALPKEKQASANSPKTILTQDYPVTVSDVKERKPCVHLDKCLDLTVLTEKIRSSESIRCEDCREGASDRRNSKGKAKNSKIKGGGSVDPKSDSNSVWICLQCGHFSCGGIGLPTNPQSHAVRHRRQTRHSLVIQFERPQRRWCFSCNSLIPVEKVEENGENKDVLSDVVKLIKERLAEKPLVGNVEDVWFGSSSVKPDERKSESTILSVSDGRDGYVVRGLTNLGNTCFFNSVLQNILAMDRLRECLLKPEASAGPLTNALKNIFDESRTVGRMKNVINPTSLFGCISSKAPQFKGYQQHDGQELLHILLDGLHNEVFGVKRRSSMEGEESCENPGPTFVNEIFGGQISSTVCCIECGHSSTVYEPFLDLSLSVPTTKPLAKKPQPVSRAKKKTKPPPKRGGRAWTEVKKDAAIVTAQSVSDLSGPQSSSAGSTSEAAESASTPQNLSDDRESGVKQVLEDVREQTLDSFVWLDYLEPEPSLEQTSDTVTWQDYLGPESFSDKLDVTSENNNNSDNKDKSSNDVSLKDSFESSTQISSLYRETEMRPDFSPVNSWEDEQPLQLQESEVLLLPYKEESSTTEEVRMDDQASSTLAGGENDFEGFGDLFNEPETAADPIIGPILSNEDALGGFMAGNIIDSDADEVDNSDSPVSVESCLAYFTKPEHLSDENGYNCERCLKNLQQQRMEMKEKQTKAESRILTNGYHTGFQSDPPCLDKESFPTKDGDHSNGNTESDSISNNIDESSVSHAEKINGEAQKIEEDVVIGRSLGDSNVDEPRGTEHAATRVKCHSSPKSLSAKSEDQEMDSKFTNVKRHATKRFLIHKAPPILTIHIKRFRPDARGCYSKLKGHVCFREIINLRPYMDPRFVDREKYNYRLIGIVEHSGSMMGGHYVAYVRGGNSKRGDGKAEKENDGSVWYHADDSRIKEVSLDQVLRQEAYILFYEMLR 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1767262 1771450 + Conep07aG0040500.1 Cone7ag0396 440992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0396 956 Gene3D Cysteine proteinases 213 414 - -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 783 797 - -
Cone7ag0396 956 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 229 244 IPR018200 GO:0004843(InterPro)
Cone7ag0396 956 SUPERFAMILY Cysteine proteinases 227 953 IPR038765 -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 387 464 - -
Cone7ag0396 956 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 884 901 IPR018200 GO:0004843(InterPro)
Cone7ag0396 956 MobiDBLite consensus disorder prediction 426 461 - -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 712 754 - -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 74 101 - -
Cone7ag0396 956 ProSiteProfiles Zinc finger UBP-type profile. 42 179 IPR001607 GO:0008270(InterPro)
Cone7ag0396 956 Coils Coil 683 707 - -
Cone7ag0396 956 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 228 955 IPR028889 -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 394 408 - -
Cone7ag0396 956 SUPERFAMILY RING/U-box 42 159 - -
Cone7ag0396 956 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 71 953 IPR050185 -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 779 813 - -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 509 539 - -
Cone7ag0396 956 Pfam Zn-finger in ubiquitin-hydrolases and other protein 101 158 IPR001607 GO:0008270(InterPro)
Cone7ag0396 956 Pfam Ubiquitin carboxyl-terminal hydrolase 228 952 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cone7ag0396 956 MobiDBLite consensus disorder prediction 1 27 - -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 512 528 - -
Cone7ag0396 956 FunFam Ubiquitinyl hydrolase 1 39 182 - -
Cone7ag0396 956 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 182 IPR013083 -
Cone7ag0396 956 MobiDBLite consensus disorder prediction 740 754 - -
Cone7ag0396 956 SMART Zf_UBP_1 96 149 IPR001607 GO:0008270(InterPro)
Cone7ag0396 956 Gene3D Cysteine proteinases 643 721 - -
Cone7ag0396 956 Gene3D Cysteine proteinases 759 956 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0396 K11844 - - csv:101204267 914.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0396 Cone-Chr7:1767262 Cone8ag0587 Cone-Chr8:4919698 1.21E-19 dispersed
Cone7ag0396 Cone-Chr7:1767262 Cone12ag0579 Cone-Chr12:4373716 1.50E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35