Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0399 | ATGGTTGTCCCAGACGTTGACAATAAGCTGCTTGAAGAACTCGAGGCAATGGGTTTCTCAACAGCACGAGCAACTCGAGCCCTTCATTATTCTGGTAATGCAAGCCTTGAGGCTGCTGTAAATTGGGTAGTTGAACATGAAAGTGATCCAGACATTGAGCAAATGCCTTTGGTGTCTCCTAGCGCCAAAGTCGAGGCTCCAAAACCTTCTCTTACACCAGAAGAATTGAAAGCCAAGCAACAAGAACTAAGGGAACGTGCTCGCAAGAAAAAAGAAGAGGAAGAAAGGAGAATGGAAAGAGAGAGGGAGAAGGAGAGAATTCGTGTGGGGAAGGAGCTTTTAGAAGCCAAGAGAATTGAAGAAGATAATGAAAGGAAGAGAATAATTGCTTTGAGAAAAGCTGAAAAAGCGGAGGAGCAAAGAGCTAGGGAAAAAATTCGCCAGAAATTGGATGAGGACAAAGCAGAAAGGAGAAGGAAGCTTGGATTACCACCAGAAGAACCTTCGACTGCAAAACCTTCTACAGCTGTTGTAGAGGAGAAAAAGAGTGCATTGCCAATAAGGCCAGCCACAAAGGCAGAGCAAATGAGAGAGTGTTTGCGGTCTTTAAAGCAGACCCACAAGGATGATGATGCGAAAGTGAAGAGAGCATTCCAAACTCTTTTAACTTACATAGGGAACGTTGTCAAAAATCCCGATGAGGAGAAGTTCAGAAAAATTCGACTCACAAACCAATCTTTCCAGGATAGAGTTGGTGCACTGAAAGGGGGCATTGAGTTTCTTGTGCTGTGTGGGTTTGAGAAAGCCGAAGGAGGCGAATTCTTGTTTCTTCAAAGGGACAAGGTCGACACGGCCATACTCAACTCGGCAGGTGCCGAGCTGGACTCTGCAATAAAAAACCCTTTCTTTGGAGTTTTATAA | 921 | 44.52 | MVVPDVDNKLLEELEAMGFSTARATRALHYSGNASLEAAVNWVVEHESDPDIEQMPLVSPSAKVEAPKPSLTPEELKAKQQELRERARKKKEEEERRMEREREKERIRVGKELLEAKRIEEDNERKRIIALRKAEKAEEQRAREKIRQKLDEDKAERRRKLGLPPEEPSTAKPSTAVVEEKKSALPIRPATKAEQMRECLRSLKQTHKDDDAKVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNQSFQDRVGALKGGIEFLVLCGFEKAEGGEFLFLQRDKVDTAILNSAGAELDSAIKNPFFGVL | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1775254 | 1778876 | + | Conep07aG0040800.1 | Cone7ag0399 | 440995 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0399 | 306 | SUPERFAMILY | UBA-like | 4 | 57 | IPR009060 | GO:0005515(InterPro) | |
| Cone7ag0399 | 306 | SMART | uba_6 | 7 | 45 | IPR015940 | - | |
| Cone7ag0399 | 306 | Gene3D | - | 7 | 53 | - | - | |
| Cone7ag0399 | 306 | Coils | Coil | 132 | 156 | - | - | |
| Cone7ag0399 | 306 | Gene3D | - | 198 | 296 | - | - | |
| Cone7ag0399 | 306 | SMART | PGNneu | 216 | 279 | - | - | |
| Cone7ag0399 | 306 | SUPERFAMILY | PUG domain-like | 189 | 302 | IPR036339 | - | |
| Cone7ag0399 | 306 | MobiDBLite | consensus disorder prediction | 60 | 105 | - | - | |
| Cone7ag0399 | 306 | Pfam | PUB domain | 213 | 284 | IPR018997 | - | |
| Cone7ag0399 | 306 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Cone7ag0399 | 306 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
| Cone7ag0399 | 306 | CDD | PUB_UBA_plant | 200 | 306 | - | - | |
| Cone7ag0399 | 306 | PANTHER | F13M7.16 PROTEIN | 1 | 306 | - | - | |
| Cone7ag0399 | 306 | MobiDBLite | consensus disorder prediction | 134 | 165 | - | - | |
| Cone7ag0399 | 306 | Pfam | UBA-like domain | 7 | 53 | IPR015940 | - | |
| Cone7ag0399 | 306 | Coils | Coil | 76 | 108 | - | - | |
| Cone7ag0399 | 306 | MobiDBLite | consensus disorder prediction | 134 | 184 | - | - | |
| Cone7ag0399 | 306 | MobiDBLite | consensus disorder prediction | 70 | 105 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0399 | Cone-Chr7:1775254 | Cone9ag0404 | Cone-Chr9:1870228 | 1.91E-06 | dispersed | |
| Cone7ag0084 | Cone-Chr7:370321 | Cone7ag0399 | Cone-Chr7:1775254 | 3.25E-102 | transposed | |
| Cone4ag0410 | Cone-Chr4:1864068 | Cone7ag0399 | Cone-Chr7:1775254 | 8.34E-166 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0399 | K24348 | - | mdm:103429296 | 469.159 |