Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0411 ATGGTGTCATCTATGCTTACTTCTATCCGTGCCATGTCATCCAATAAACTCTTCATTGGAGGGCTTTCATATGGAACTGATGATCAGTCACTTAGAGATGCATTTGCAAGTTTTGGGGAAGTAGTTGATGCAAAGGTTATTACTGATAGAGAAACTGGGAGGTCAAGGGGATTTGGGTTTGTCAACTACTCAGAGGGAGAGTCTGCCAGCTCAGCACTCTCTGCCATGGATGGTCAGGAGCTACATGGTCGGAATATTCGGGTTAGCTATGCTACTGATAGACCCTCTAGCCCTAGAGGAGGTGGTGGAGGAGGATTTGGAGGTGGTTTCCGTGGTGATGGCGGTTATTAA 351 46.72 MVSSMLTSIRAMSSNKLFIGGLSYGTDDQSLRDAFASFGEVVDAKVITDRETGRSRGFGFVNYSEGESASSALSAMDGQELHGRNIRVSYATDRPSSPRGGGGGGFGGGFRGDGGY 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1829893 1831366 + Conep07aG0042100.1 Cone7ag0411 441007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0411 116 PANTHER GEO13361P1-RELATED 11 105 IPR050886 GO:0005739(PANTHER)|GO:0009651(PANTHER)
Cone7ag0411 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 93 IPR000504 GO:0003723(InterPro)
Cone7ag0411 116 SMART rrm1_1 16 89 IPR000504 GO:0003723(InterPro)
Cone7ag0411 116 CDD RRM2_NsCP33_like 16 91 IPR048289 -
Cone7ag0411 116 FunFam Glycine-rich RNA-binding protein 2 4 116 - -
Cone7ag0411 116 Gene3D - 8 116 IPR012677 -
Cone7ag0411 116 MobiDBLite consensus disorder prediction 90 116 - -
Cone7ag0411 116 Pfam RNA recognition motif 17 87 IPR000504 GO:0003723(InterPro)
Cone7ag0411 116 SUPERFAMILY RNA-binding domain, RBD 6 115 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0411 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0779 Cone-Chr5:3337810 Cone7ag0411 Cone-Chr7:1829893 2.98E-14 dispersed
Cone6ag0096 Cone-Chr6:469588 Cone7ag0411 Cone-Chr7:1829893 3.01E-21 dispersed
Cone7ag0411 Cone-Chr7:1829893 Cone8ag1417 Cone-Chr8:11075019 2.30E-24 dispersed
Cone9ag1273 Cone-Chr9:9503800 Cone7ag0411 Cone-Chr7:1829893 3.91E-08 dispersed
Cone14ag0247 Cone-Chr14:1143035 Cone7ag0411 Cone-Chr7:1829893 6.53E-40 wgd
Cone4ag0421 Cone-Chr4:1913987 Cone7ag0411 Cone-Chr7:1829893 3.47E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92