Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0488 | ATGCTTGTCGCTGGTTATGATCTGGACATGTCAAATATTACTGATCGATTACTAGCCATGTTGTTTCCTGCTGAACTTATGCGTGCAGTTTTTCATAATCCTATCTGGCAGGTCAAGTCCGTACTGGACATGAGACATAAGGACCGTTACAAGATTTATAATCTTTGGATAGAAAAATCCTATGATCCATTGAAATTTCATGGACGGGTGCAGTGGTTTCCTTTTGACGACAGCCATGTCCCGTCTCTACCCATGATTAAGCTTTTTTGTGCAGGAAAAGGCCGGACGGGCTTAATGGTATGTGCCTACCTAGTTTACTGTGGCATGTCAGCTGACAAGGCACTTCAACGGTATGCACATAGGCAGACCACCAATGATGAAGGAATACTTCCAGAAGTAGACTTGCCGACACAATGCCGAAGAGAGCTACGGCGTATTCGGCTTTATGATACCATTAACATCGAATCAATCTTCTTTGTTGTCATAGAGATGCGGGAAGTTTCAAATCAACTATACCGTCCATCTGTGGAACTCACACGGGGTTGTTGCAGACAAATTAAGAGTGGTCATCAGAGAAAGAACAGTTCCCGTTATTATCTCTCATTTGTAGGAAGTAGTGAAGAGAATGAATCCGAATCAGAAGGGCCTCATTTGGTGACAGGTGACATTCGTGTCATATTCTACGAAAAAAAGAAAGGAAGATGGCCCTTTTACCCCTGTTTCAACACTGCTTTCATTAGGAACAGCTTGCTTCAGCTCACTGTGGGGGACTTGGATAAAGATGAGAAGAAGGGGAGGTCGATATGCGGCCCTGCCTTCTGCTTGGAGTTGCTGTTTGGTCCTGCTAATGCAAGTCACTCGGTTTTTTTCTCCGTCCGATGA | 882 | 44.22 | MLVAGYDLDMSNITDRLLAMLFPAELMRAVFHNPIWQVKSVLDMRHKDRYKIYNLWIEKSYDPLKFHGRVQWFPFDDSHVPSLPMIKLFCAGKGRTGLMVCAYLVYCGMSADKALQRYAHRQTTNDEGILPEVDLPTQCRRELRRIRLYDTINIESIFFVVIEMREVSNQLYRPSVELTRGCCRQIKSGHQRKNSSRYYLSFVGSSEENESESEGPHLVTGDIRVIFYEKKKGRWPFYPCFNTAFIRNSLLQLTVGDLDKDEKKGRSICGPAFCLELLFGPANASHSVFFSVR | 293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2253238 | 2254924 | + | Conep07aG0050100.1 | Cone7ag0488 | 441084 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0488 | 293 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 1 | 156 | IPR029023 | - | |
| Cone7ag0488 | 293 | SMART | PTEN_C2_2 | 136 | 281 | IPR014020 | - | |
| Cone7ag0488 | 293 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 7 | 121 | IPR029021 | - | |
| Cone7ag0488 | 293 | Gene3D | Protein tyrosine phosphatase superfamily | 3 | 91 | IPR029021 | - | |
| Cone7ag0488 | 293 | Pfam | C2 domain of PTEN tumour-suppressor protein | 154 | 280 | IPR014020 | - | |
| Cone7ag0488 | 293 | ProSiteProfiles | C2 tensin-type domain profile. | 154 | 282 | IPR014020 | - | |
| Cone7ag0488 | 293 | Gene3D | - | 145 | 284 | - | - | |
| Cone7ag0488 | 293 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 216 | 281 | IPR035892 | - | |
| Cone7ag0488 | 293 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 91 | 279 | IPR051281 | GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER) | |
| Cone7ag0488 | 293 | Gene3D | Protein tyrosine phosphatase superfamily | 92 | 144 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0488 | Cone-Chr7:2253238 | Cone8ag0143 | Cone-Chr8:749391 | 3.42E-19 | dispersed | |
| Cone4ag0515 | Cone-Chr4:2301581 | Cone7ag0488 | Cone-Chr7:2253238 | 8.91E-148 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0488 | K01110 | - | csv:101212127 | 381.719 |