Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0489 ATGGCGGCCACTAAACCTCAGAGGTCCCCCGAGGAGGTGGAAGACATTATTCTTCGCAAAATCTTCCTCGTCTCTCTCACTGAATCGTCCGACTCAAGGATCATCTATCTGGAACAAACTGCTGCCGAAATCCTAAGCGAGAGCAAAGACTTGCGCCTTTCTCGCGATTTGATGGAAAGAGTTTTAATCGATCGTCTTTCCGGCGATTTCCCCTCTGCGGAACTGCCTTTTGATTACCTAGTCGGCTGCTATCGTCGAGCTTACGATGAAGGTAAGAAAATTACTTCCATGAAAGATAAGAACTTAAGGTCTGAGATGGAATTAGTCGTAAAGCAAGCAAAGAAGCTGGTGGTTTCATATTGCAGGATTCATTTAGGCAATCCCGAACTGTTTTCGGGTGGTAATTCTAATGAGAATTCAAAGAATTCGCCTTTATTGCCATTGATTTTCTCAGAGCTTGGGAATTCACTGGATGGATATGGTGGTAGTAGTAGTAGTCGAGTAAATCAGTCGCCGCCTGGGTTTTTGGATGAGTTCTTTAAGGACTCAGATTTTGATACCTTGGATCCCATATTGAAAGGATTATATGAGGCTGTCAGGGCCAGTGTGCTTAATGTTTCGGCTTTGGGTAATTTTCAGCTTCCATTAAGGGCACTACGGTATTTGGTTCAAATTCCAATCGGGGCTAAGTCTCTTGTGAGTCATCCATGGTGGATTCCCAAAGAAGCGTATTTCAATGGTCGTGTGATTGAGATGACTAGCATTTTGGGGCCTTTTCTTCATGTTAGTGCTCTACCTGATCACATGCTTTTTAAGAGCCAGCCTGATGTAGGGCAGCAGTACTTTTCAGATATAGAAAATCGTAGGCCAGCGGACTTATTATCCGCTTTCACCACCATAAAAACAGTGATGAATATCTTATATGATGGCCTATCAGAAGTTCTTCTCATCCTTCTGAAGAATGCAGATACCCGTGAAAGGGTTCTTGCCTGTCTAGCCGAGATTATCAACTTAAACTCATCGAGAGCTCATATACAGGTTGATCCTCTCTCCTCTGCAAGTTCAGGCACCTTTGTCAATCTCAGTGTTGTTATGCTTCGGCTTTGTGAACCATTTTTAGATGCAAACCTGACAAAAAGGGATAAAATCGATTCAAAATATGTATTTTACAGTACCCGTTTAGATTTAAGAGGGCTGACTGCTCTAAATGCTTCATCAGAAGAAGTTGCTGAATGGATTAAGAATAATTGTAATAGTCCAAGTACAACTGATAGCTCTAAACAGTATACTGAAAGTGAAAATCGTTTGCTTCAATCTCAAGAAACTTCCAGTTCTGGTAGTAACAATTCTGCAAAGCCAACATCAAATGGTGAAAACACAAAATTTCCGTTCATATGTGAATGCTTCTTTATGACTGCAAGGGTACTCAATTTGGGATTGTTGAAAGTACTTTCTGACTTCAAGCATTTAGCTCAGGACATTCAAAGAAGTGAAGATACGCTCTCCACATTTAAAGCCATGCAAGAGCAAACACCTGATAATAAACAGCTAGTGGCTGATATAACTCGGCTTGAAAAAGAAATCGATATATATAAACAGGAAAAGTATTGTATTGAAGCGCAAATATTGAGGGACGAGACACTATTTCAACGTGCTCTTTCTTTCTATCGATTAATGGTCATTTGGTTGGTTGGCTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTTCCCTGTGGAATTTGCTTCCATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTAATATTTGCTTCGAGGATCCCAAAAGCTTTAGATGGCGTCTTACTGGACGATTTTATGAACTTCATCATCATGTTCATGGCAAGTCCAAATTATATCAGAAACCCTTACCTACGAGCAAAGATGGTTGAAGTCTTGAATGGCTGGATATCTCGTAGAAGTGGTCCATCTGCTACAGCTACTTTGTTTGAAGGGCACCAACTTGCTCTACAGTATCTTGTGAGGAATCTTTTGAAGCTCTATGTTGATATTGAGTTCACTGGCTCTCACACTCAGTTCTATGACAAATTCAGCATCCGCCATAATATTGCGGAACTTCTTGAATACCTCTGGCAGGTTCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAAGAGGAGAAGGGTGTCTATCTGAATTTCTTAAACTTCCTGATCAATGATAGTATCTATCTTCTCGATGAAAGCCTTAATAAAATTCTTGAGCTAAAAGGGCTGGAAGCTGAGATGTCAAACACTGCAGAATGGGAGAGGCGAACGCAGCAAGAGAGACAAGAGAGAACACGGCTATTCCACTCTCAAGAAAATATTATCAGGATTGATATGAAACTAGCCAATGAGGATGTAAGCATGCTAGCATTTACTTCAGAGCAGATCACTGCCCCTTTCCTACTTCCTGAGATGGTTGATAGAGTTGCCAGCATGCTGAATTACTTTCTGTTGCAACTCGTCGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCAAAGGAACTGCTTAAGCAGATTGTTCACATATATGTTCATCTTGCAAGAGGCGATTCGGAAAATATTTTCCCATCTTCTATATCAAAGGACGGACGGTCATACAACGAGCAGTTGTTTACTGCTGCGGCAGTTGTCCTTAGAAGAATCGGAGAAGATGGAAGGATTATACAAGAATTTGTAGAGCTCGGTAACAAGGCCAAAGTTGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTTGGAGAGATTCCGGACGAATTCCTTGACCCTATTCAATACACTTTAATGAAGGATCCAGTCATCTTACCCTCTTCGAGGATCACAATCGACAGGCCGGTTATTCAGAGGCATCTCCTCAGTGATAGTACGGACCCATTTAACCGTTCTCATCTTACTGTGGAGATGCTGATTCCGGACACTGAATTGAAAGCCAGGATCGAAGAGTTCATCAAATCCCAAGAAGCGAAGAGGCGATCGGATCCTCTCAGCGCACAGGGGTCGAAGGCAACAATTCAGACTACAAGTGATGAAATGTTGATTGATTAG 3105 41.87 MAATKPQRSPEEVEDIILRKIFLVSLTESSDSRIIYLEQTAAEILSESKDLRLSRDLMERVLIDRLSGDFPSAELPFDYLVGCYRRAYDEGKKITSMKDKNLRSEMELVVKQAKKLVVSYCRIHLGNPELFSGGNSNENSKNSPLLPLIFSELGNSLDGYGGSSSSRVNQSPPGFLDEFFKDSDFDTLDPILKGLYEAVRASVLNVSALGNFQLPLRALRYLVQIPIGAKSLVSHPWWIPKEAYFNGRVIEMTSILGPFLHVSALPDHMLFKSQPDVGQQYFSDIENRRPADLLSAFTTIKTVMNILYDGLSEVLLILLKNADTRERVLACLAEIINLNSSRAHIQVDPLSSASSGTFVNLSVVMLRLCEPFLDANLTKRDKIDSKYVFYSTRLDLRGLTALNASSEEVAEWIKNNCNSPSTTDSSKQYTESENRLLQSQETSSSGSNNSAKPTSNGENTKFPFICECFFMTARVLNLGLLKVLSDFKHLAQDIQRSEDTLSTFKAMQEQTPDNKQLVADITRLEKEIDIYKQEKYCIEAQILRDETLFQRALSFYRLMVIWLVGLVGGFKMPLPSTFPVEFASMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNYIRNPYLRAKMVEVLNGWISRRSGPSATATLFEGHQLALQYLVRNLLKLYVDIEFTGSHTQFYDKFSIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKGLEAEMSNTAEWERRTQQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDSENIFPSSISKDGRSYNEQLFTAAAVVLRRIGEDGRIIQEFVELGNKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITIDRPVIQRHLLSDSTDPFNRSHLTVEMLIPDTELKARIEEFIKSQEAKRRSDPLSAQGSKATIQTTSDEMLID 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2255531 2261173 + Conep07aG0050200.1 Cone7ag0489 441085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0489 1034 PANTHER UBIQUITINATION FACTOR E4 8 1012 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(PANTHER)|GO:0034450(InterPro)|GO:0036503(InterPro)
Cone7ag0489 1034 MobiDBLite consensus disorder prediction 417 456 - -
Cone7ag0489 1034 Pfam Ubiquitin elongating factor core 256 919 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
Cone7ag0489 1034 FunFam Ubiquitin conjugation factor e4 a 935 1013 - -
Cone7ag0489 1034 ProSiteProfiles U-box domain profile. 935 1009 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0489 1034 Pfam U-box domain 936 1007 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0489 1034 Coils Coil 514 541 - -
Cone7ag0489 1034 SMART Ubox_2 939 1002 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag0489 1034 CDD RING-Ubox_UBE4A 938 1006 - -
Cone7ag0489 1034 MobiDBLite consensus disorder prediction 1007 1034 - -
Cone7ag0489 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 935 1014 IPR013083 -
Cone7ag0489 1034 SUPERFAMILY RING/U-box 928 1009 - -
Cone7ag0489 1034 MobiDBLite consensus disorder prediction 1012 1034 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0516 Cone-Chr4:2304843 Cone7ag0489 Cone-Chr7:2255531 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0489 K10597 - mdm:103404484 1593.17