Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0492 ATGGAGGTTCTGAGAACGGGAATCTCGAATAGCCGCCGGTCACCGTCAGTGGCGGCCATGGCGGTGATGCTCTGTGCCATGGCGGTAATGCTGCCGGAAGTTTCAGCTACTCGGTGGACTGTGGGAGGTAACATGGGATGGACTAGTAATAGTAATGTTAACTACACTATTTGGGCTCAAGATAAGCATTTCTATAATGGCGACTGGCTTTTTTTCGTGTATGATAGGAACCAAATGAATGTTCTGGAGGTGAACAAGACAAATTACGAGTCATGTAACTCGGACCACCCTCTCCACAACTGGACCACTGGGGCCGGAAGGGACGTGGTCCCACTGAATGTAACAAGACCCTACTACTTCATAAGCGGCAAGGGCTTCTGCTATGGGGGCATGAAGCTGGCTGTCACGGTCGAAAACTCACCTCCACCTCCCTCTGCTTCCCCCGTAAAAAACAGTGCTATGATGTTAACTTCTGGTCGTCATGTTGTTTTGCCTTTGGTTTTTGCCGTTGGTGCTGCTTGGGATGCGTTCGTTCGATTCTGGTAG 546 50.18 MEVLRTGISNSRRSPSVAAMAVMLCAMAVMLPEVSATRWTVGGNMGWTSNSNVNYTIWAQDKHFYNGDWLFFVYDRNQMNVLEVNKTNYESCNSDHPLHNWTTGAGRDVVPLNVTRPYYFISGKGFCYGGMKLAVTVENSPPPPSASPVKNSAMMLTSGRHVVLPLVFAVGAAWDAFVRFW 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2266053 2268259 + Conep07aG0050500.1 Cone7ag0492 441088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0492 181 Gene3D - 35 141 IPR008972 -
Cone7ag0492 181 SUPERFAMILY Cupredoxins 36 137 IPR008972 -
Cone7ag0492 181 ProSiteProfiles Phytocyanin domain profile. 37 139 IPR003245 GO:0009055(InterPro)
Cone7ag0492 181 FunFam Lamin-like protein 35 140 - -
Cone7ag0492 181 Pfam Plastocyanin-like domain 47 131 IPR003245 GO:0009055(InterPro)
Cone7ag0492 181 PANTHER BLUE COPPER PROTEIN 25 142 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0492 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0619 Cone-Chr18:3164982 Cone7ag0492 Cone-Chr7:2266053 1.45E-31 dispersed
Cone4ag0517 Cone-Chr4:2314218 Cone7ag0492 Cone-Chr7:2266053 1.87E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone8ag0534 . 30 170 Phytocyanin Superfamily AT1G64640 60.1 1.5e-39 160.2
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone5ag1429 . 1 225 Phytocyanin Superfamily AT1G08500 54.4 7.8e-64 241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38