Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0493 ATGGCGAAGAAACAAGAACCTACAAGAGATTCAGCTCCACCCCCACGGCCAACTATCACTCTACCACCTCGGCCGCCTGCGGAGGCTTTTTTATACGGCGGAGCCGGAGTAAGCCCTGGCCCAATGACTCTCGTGTCTAGCTTCTTCTCCGATAACTCTTCTGGCTCACCCTCCTTCTCTCAGCTTCTAGCTGGAGCGATGGGCTCGCCTATGGGTACGGGTATGGGTATGAGCTTCTTCGGGTCTGATTCGACCCAGAATTACTCTTCTTCAAACGACGGAGGAACAATAAACGGGCTGTCTGAGAAGAATTCTAGCTTTAAGCAGAATAGGCCGATGGGTTTAACGGTTCCTTTCTCTCCATTATTCACAATTCCGCCTGGATTGAGCCCCTCTGGATTGCTTAACTCGCCTGGATTCTTTTCCCCTCAGAGCCCCTTTGGAATGTCCCACCAACAAGCCTTGGCTCAGGTCACAGCCCAAGCAGCACTAGCCCAATCCCAAATCCATATCCAACCCGAATATCAACCTTCTTCATTACCACCTGGTCCACCCCCAACCGAGTCCTCAGCCCATCATTCTTCTTCTCTTTCCATAGAGGAACCTTCACAGCAGCAAAATCTAACGGCTTTGTCCACATCAGAACCTGACACGAAAATTCGACCCATTTCCTATACTTGTGATAAACCCACAGATGATGGCTACAACTGGAGAAAGTATGGGCAAAAACAAGTTAAGGGGAGTGAGTATCCAAGAAGCTACTACAAGTGTACTCATCTAAATTGCCCAGTTAAAAAGAAGGTAGAGTTTTCTTCTAATGGTCAGGTGACAGAGATTACATACAAAGGCAAGCACAACCATGACTTGCCTCGGACGAATAGGCGGGCAAAAGACAGTAATGAGCCATGTGGGCATCTAACAAATTCTCAGCATAAGATGGAAGTTGATTCTCATAGAAAACATGAGATAAATCAAGAATGTGCTCAAGCTGGTCCAATTCCACTACCCGAGTCAAGTGATGTGGATCAGTTAGGGGATGTAGAGACGGCACAAGATGGGGATAGGGATGAGCCGGAAGCTAAGAGAAGGAACTTGGATGCTGGGACATCAATAGTTGGTTCGTCACAAAAGCCTGTTACAGAACCGAAAATCATTTTGCAAACAAGAAGTGAAGTTGACCTTTTAGATGATGGGTACAGGTGGCGCAAGTATGGGCAGAAGGTGGTCAAAGGGAATCCTTATCCAAGGAGCTATTACAAATGCACTACAGCAGGATGCAACGTCCGAAAGCACGTGGAGAGGGCTTCAACGGACCTAAAAGCTGTCATTACTACCTATGAAGGGAAACACAACCACCAAGTCCCTGCATCTAGAAACAGCAGCCACAATACAGCCATGGCCGCGAATGCACCACTGCCTATGAAACCACAACTGGCAGCACATCAAGCTGCAGCTCAGAATAAGCATTCGTTACTTAATGAGTTGGATTTCGGAACCAACAATGACCAGAGACCAGGCGTTCTTCGCCTCAAAGACGAGCAAATCACCGTCTAA 1554 47.68 MAKKQEPTRDSAPPPRPTITLPPRPPAEAFLYGGAGVSPGPMTLVSSFFSDNSSGSPSFSQLLAGAMGSPMGTGMGMSFFGSDSTQNYSSSNDGGTINGLSEKNSSFKQNRPMGLTVPFSPLFTIPPGLSPSGLLNSPGFFSPQSPFGMSHQQALAQVTAQAALAQSQIHIQPEYQPSSLPPGPPPTESSAHHSSSLSIEEPSQQQNLTALSTSEPDTKIRPISYTCDKPTDDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVEFSSNGQVTEITYKGKHNHDLPRTNRRAKDSNEPCGHLTNSQHKMEVDSHRKHEINQECAQAGPIPLPESSDVDQLGDVETAQDGDRDEPEAKRRNLDAGTSIVGSSQKPVTEPKIILQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCNVRKHVERASTDLKAVITTYEGKHNHQVPASRNSSHNTAMAANAPLPMKPQLAAHQAAAQNKHSLLNELDFGTNNDQRPGVLRLKDEQITV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2269946 2273573 + Conep07aG0050600.1 Cone7ag0493 441089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0493 517 Gene3D WRKY domain 223 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 Gene3D WRKY domain 380 456 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 ProSiteProfiles WRKY domain profile. 390 455 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 ProSiteProfiles WRKY domain profile. 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 MobiDBLite consensus disorder prediction 285 301 - -
Cone7ag0493 517 MobiDBLite consensus disorder prediction 1 34 - -
Cone7ag0493 517 SUPERFAMILY WRKY DNA-binding domain 387 455 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 SMART WRKY_cls 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 SMART WRKY_cls 395 454 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 Pfam WRKY DNA -binding domain 396 453 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 MobiDBLite consensus disorder prediction 349 378 - -
Cone7ag0493 517 MobiDBLite consensus disorder prediction 189 220 - -
Cone7ag0493 517 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 165 480 IPR044810 GO:0003700(InterPro)
Cone7ag0493 517 FunFam WRKY transcription factor 33 382 448 - -
Cone7ag0493 517 MobiDBLite consensus disorder prediction 285 322 - -
Cone7ag0493 517 MobiDBLite consensus disorder prediction 349 364 - -
Cone7ag0493 517 SUPERFAMILY WRKY DNA-binding domain 229 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone7ag0493 517 FunFam WRKY transcription factor 220 291 - -
Cone7ag0493 517 MobiDBLite consensus disorder prediction 82 112 - -
Cone7ag0493 517 MobiDBLite consensus disorder prediction 174 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0599 Cone-Chr4:2739002 Cone7ag0493 Cone-Chr7:2269946 1.95E-44 dispersed
Cone7ag0493 Cone-Chr7:2269946 Cone9ag0026 Cone-Chr9:128238 5.92E-77 dispersed
Cone15ag0511 Cone-Chr15:2482764 Cone7ag0493 Cone-Chr7:2269946 6.10E-29 wgd
Cone16ag0479 Cone-Chr16:6955697 Cone7ag0493 Cone-Chr7:2269946 5.15E-183 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone7ag0493 Cone-Chr7:2269946 4.35E-175 wgd
Cone4ag0520 Cone-Chr4:2323337 Cone7ag0493 Cone-Chr7:2269946 0 wgd
Cone6ag0556 Cone-Chr6:2738542 Cone7ag0493 Cone-Chr7:2269946 3.92E-60 wgd
Cone7ag0493 Cone-Chr7:2269946 Cone9ag0551 Cone-Chr9:2624393 6.93E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46472 PF00443 UCH 3.70E-51 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0493 - - - 0.0