Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0496 ATGGATGTATCAACTGGCCGAGGTGGCAGCGGTGCGGATATGTTTTTGTCTAATTACAAGCTTGGGAAAACTCTTGGAATTGGTTCATTTGGAAAGGTCAAAATTGCAGAACATGTGTTAACTGGTCATAAAGTTGCTATTAAGATCCTCAACAGGAGAAAGATTAAGAACTTGGATATGGAAGAAAAAGTGCGAAGAGAGATAAAGATATTGAGATTGTTCATGCATCCTCATATCATAAGACTCTACGAAGTCATAGAGACACCAACAGATATCTATGTGGTGATGGAGTATGTCAAGTCTGGAGAGCTCTTTGATTACATCGTTGAGAAGGGTAGGTTGCAGGAAGACGAAGCTCGTAGCTTTTTTCAGCAGATAATATCCGGTGTGGAGTATTGCCACAGGAATATGGTGGTTCACAGAGATCTTAAACCAGAGAATTTGCTTTTGGATTCCAAATGCAATGTCAAGATTGCTGATTTCGGTCTGAGCAATATAATGCGTGATGGTCATTTTCTTAAGACAAGTTGTGGAAGTCCCAATTATGCTGCCCCAGAGGTCATTTCTGGGAAATTGTATGCGGGTCCTGAAGTTGATGTCTGGAGCTGTGGTGTTATATTGTATGCTCTTCTTTGTGGCACACTTCCCTTCGATGATGAAAACATTCCCAACCTTTTTAAGAAAATAAAGGGTGGGATTTATACTCTTCCCAGTCATTTATCACCGGGTGCAAGAGATTTGATTCCAAGAATGCTTGTGGTTGACCCAATGAAACGAGTGACCATACCAGAGATTCGGCAACACCCTTGGTTCCAAGCCCATCTTCCTCGCTATTTAGCTGTGCCACCTCCTGATACAACGCAACAAGCAAAAAAGATCGATGAGGACATCCTCCAAGAAGTGGTTAAGATGGGATTTGACAGGAATCAGCTGATTGAGTCTCTTCGAGTCAGAGTTCAAAATGAGGGTACTGTCGCATACTATCTCTTGCTCGACAACCGGTTCCGTGCCTCAAGCGGCTATCTTGGAGCTGAGTTTCAGGAAACTATGGATTCTGGGTTCACCCGTATGCACCCAAGTGAGATGCTGACCTCTCCTCCTCTTGCACCCCGCTCTCCTGGGTATATGGACTATCAAGGAATGGGAATAAGACCACAGTTTCCCGTCGAGAGAAAGTGGGCTCTAGGGTTACAGTCTAAAGCTCATCCTCGTGAAATAATGACGGAAGTCCTTAAGGCTCTACAAGGACTCAATGTGGGCTGGAAAAAGATAGGTCACTACAACATGAAGTGCAGGTGGGCGGCCGGCCAGCCCAGCAACAGCTACTTCAGTGACGATTCCGTAATTATCGAGAATGATGGTAATCTCACATTACCAAATGTCGTCAAGTTTGAAGTCCAGCTCTACAAAACACGAGAGGAGAAGTATCTACTTGATCTGCAGAGGGTCCAGGGCCCGCAGTTTCTCTTCTTGGACCTGTGCGCCGCATTTCTCACTCAGCTCCAAGTTCTTTGA 1515 44.75 MDVSTGRGGSGADMFLSNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRVTIPEIRQHPWFQAHLPRYLAVPPPDTTQQAKKIDEDILQEVVKMGFDRNQLIESLRVRVQNEGTVAYYLLLDNRFRASSGYLGAEFQETMDSGFTRMHPSEMLTSPPLAPRSPGYMDYQGMGIRPQFPVERKWALGLQSKAHPREIMTEVLKALQGLNVGWKKIGHYNMKCRWAAGQPSNSYFSDDSVIIENDGNLTLPNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLTQLQVL 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2280931 2284573 + Conep07aG0050900.1 Cone7ag0496 441092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0496 504 CDD UBA_SnRK1_plant 293 333 - -
Cone7ag0496 504 FunFam Non-specific serine/threonine protein kinase 396 502 - -
Cone7ag0496 504 SUPERFAMILY KA1-like 328 503 IPR028375 -
Cone7ag0496 504 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515(InterPro)
Cone7ag0496 504 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 455 503 IPR001772 -
Cone7ag0496 504 Pfam Kinase associated domain 1 461 503 IPR001772 -
Cone7ag0496 504 Gene3D Kinase associated domain 1, KA1 396 503 - -
Cone7ag0496 504 Pfam UBA/TS-N domain 293 329 IPR015940 -
Cone7ag0496 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0496 504 Gene3D Transferase(Phosphotransferase) domain 1 10 350 - -
Cone7ag0496 504 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0496 504 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
Cone7ag0496 504 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Cone7ag0496 504 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Cone7ag0496 504 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Cone7ag0496 504 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0496 504 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0496 504 SUPERFAMILY Protein kinase-like (PK-like) 15 288 IPR011009 -
Cone7ag0496 504 CDD STKc_AMPK_alpha 16 271 - -
Cone7ag0496 504 CDD AMPKA_C 390 501 - -
Cone7ag0496 504 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 16 292 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone7ag0496 504 SMART uba_6 294 331 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0496 Cone-Chr7:2280931 Cone7ag0630 Cone-Chr7:3198882 1.69E-81 dispersed
Cone9ag1467 Cone-Chr9:10865249 Cone7ag0496 Cone-Chr7:2280931 1.84E-62 dispersed
Cone16ag0476 Cone-Chr16:6943301 Cone7ag0496 Cone-Chr7:2280931 4.89E-247 wgd
Cone2ag0538 Cone-Chr2:2981490 Cone7ag0496 Cone-Chr7:2280931 2.50E-128 wgd
Cone4ag0522 Cone-Chr4:2338067 Cone7ag0496 Cone-Chr7:2280931 0 wgd
Cone6ag0951 Cone-Chr6:4980591 Cone7ag0496 Cone-Chr7:2280931 1.73E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83007 PF09409 PUB 2.70E-23 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0496 K07198 - mdm:103429042 906.36