Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0505 ATGAGGGAAATGGGCTATTATGAAATTCTTCTAGTTGTGTTCTTCTCAATGGCATCATCTGTTTGTGGGTACTATGGAGGTTGGTCTAATGCTCATGCCACTTTCTATGGAGGATCCGATGCTTCCGGCACGATGGGTGGAGCATGTGGGTATGGAAATCTTTATAGCCAGGGATATGGGACAAACACAGCAGCATTGAGTACAGCATTGTTTGAGAATGGACTGAGCTGTGGTGCATGTTTCGAGCTTAGATGTGTAAACGACCCGCACTGGTGTCTTTCCAATTTGATTGTAGTCACTGCTACCAATTTCTGCCCGCCAGGCGGGTGGTGCGATCCTCCTCAACAACACTTTGATCTTTCTCAGCCAATCTTTCAACACATTGCTCAATATAGAGCGGGAGTTGTCCCTGTGGCTTACAGGAGGGTAAGATGCAAAAGAAGTGGAGGAATCAGATTCACAATCAACGGCCACTCATACTTCAACCTAGTCCTAATCACTAACGTAGGTGGTGCTGGTGATGTCCATGCTGTATCCATAAAGGGCTCAAGGACTAGATGGCAGCCTATGTCAAGGAACTGGGGTCAAAATTGGCAAAGTAATTCATACCTCAACGGTCAAAGCCTCTCCTTCTTAGTCACAACAAGTGATGGTCGGAGTTTGATCTCGTACAACGTGGCTCCTTCTAGTTGGTCGTTTGGTCAGACGTATAGCGGACGACAGTTTCTGTATTAG 735 46.39 MREMGYYEILLVVFFSMASSVCGYYGGWSNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFENGLSCGACFELRCVNDPHWCLSNLIVVTATNFCPPGGWCDPPQQHFDLSQPIFQHIAQYRAGVVPVAYRRVRCKRSGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSLISYNVAPSSWSFGQTYSGRQFLY 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2331133 2332529 + Conep07aG0051900.1 Cone7ag0505 441101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0505 244 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Cone7ag0505 244 CDD DPBB_EXPA_N 27 145 - -
Cone7ag0505 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Cone7ag0505 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Cone7ag0505 244 FunFam Expansin 150 242 - -
Cone7ag0505 244 Gene3D - 150 242 IPR036749 -
Cone7ag0505 244 Gene3D - 14 146 IPR036908 -
Cone7ag0505 244 SUPERFAMILY Barwin-like endoglucanases 12 168 IPR036908 -
Cone7ag0505 244 SUPERFAMILY PHL pollen allergen 147 238 IPR036749 -
Cone7ag0505 244 FunFam Expansin 18 146 - -
Cone7ag0505 244 PANTHER EXPANSIN-A15 12 242 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 SMART dpbb_1 63 140 IPR007112 -
Cone7ag0505 244 PRINTS Expansin signature 161 182 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 97 107 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 125 138 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 85 96 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 225 241 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 58 72 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 196 217 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 149 161 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin signature 108 125 IPR002963 GO:0009664(InterPro)
Cone7ag0505 244 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576(InterPro)
Cone7ag0505 244 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576(InterPro)
Cone7ag0505 244 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Cone7ag0505 244 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576(InterPro)
Cone7ag0505 244 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576(InterPro)
Cone7ag0505 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cone7ag0505 244 Pfam Lytic transglycolase 63 140 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0505 Cone-Chr7:2331133 Cone7ag1075 Cone-Chr7:8181630 5.53E-115 dispersed
Cone13ag0949 Cone-Chr13:8148708 Cone7ag0505 Cone-Chr7:2331133 1.10E-136 wgd
Cone13ag0065 Cone-Chr13:406449 Cone7ag0505 Cone-Chr7:2331133 1.45E-136 wgd
Cone19ag0939 Cone-Chr19:7191805 Cone7ag0505 Cone-Chr7:2331133 4.70E-138 wgd
Cone4ag0531 Cone-Chr4:2389577 Cone7ag0505 Cone-Chr7:2331133 1.47E-180 wgd
Cone6ag0576 Cone-Chr6:2820883 Cone7ag0505 Cone-Chr7:2331133 2.54E-141 wgd
Cone7ag0505 Cone-Chr7:2331133 Cone9ag0581 Cone-Chr9:2741577 2.24E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0505 K20628 - rcu:8261626 452.21