Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0516 ATGGATATAACCAGCACCGCCACGAACATAACAAGTTCTCCGGAAGCTCAAAGAGAAACACCAATCAAGATCCAACCCATAAAGCCTCTACCTTTCAGCAACGGAGTACTCAAGCGCCACCACCACCATCTCCAGCATCACCACCAGGTCATCATACCCTCCACAACCACCACCACCACCACCACCACCACCTACAAAGAGTGTCTCAAAAACCATGCGGCCACCTTAGGAGCTCACGCCCTAGATGGCTGTGGTGAATTCATGCCATCTCCCACCGCCACGCCATCTGATCCCACCTCTCTAAAATGCGCCGCTTGCGGCTGCCACCGCAATTTCCACCGCCGCGAACCTGACCCCACCACCGCCACAACTACAGCCACCGCAACCCACGCTATCGAGTACCAATCTCACCACCGCCACCACCCACCGCCTCCACCTCCTCTGCAGCCGAATCGGAGCCCCAATTCAGCTTCCCCCCCTCCAATCTCTTCCTCTTACTACCCATCAGCTCCCCACATGCTCTTAGCTCTATCTACAGGTCCTGGACCCGGGCCAAGCCCGATTAACGGGAGCTCGAATGCCAGGAAGAGGTTTAGAACGAAGTTCAGCCAAGATCAGAAAGAGAGGATGCATGAGTTCGCTGAACGAGTTGGATGGAAGATGCAGAAAAGAGATGAAGAGATCGTGCAAGAATTCTGCCATGAAGTCGGAGTCGATAAAGGTGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTTTAGGGAAGGTATCGTCGATGAATAACATGAAGGATGTTAATAATCATCATCTCCATCATAATGTTCTAGAACATAACAGCAGTTCCCACAACGACGATATCAACGGCAAAAACGATGCCGTTCAGAATCGAAGTACGAATCATGAGTACGAGGATGATGAGGACAATGATGAAGTTGATCCTGATCAGGAAGGAGTACTTCCTGCTATTGTTGCTGCAAACGGGTCTTCTTCTTCTTCTTGA 1002 50.5 MDITSTATNITSSPEAQRETPIKIQPIKPLPFSNGVLKRHHHHLQHHHQVIIPSTTTTTTTTTTYKECLKNHAATLGAHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDPTTATTTATATHAIEYQSHHRHHPPPPPPLQPNRSPNSASPPPISSSYYPSAPHMLLALSTGPGPGPSPINGSSNARKRFRTKFSQDQKERMHEFAERVGWKMQKRDEEIVQEFCHEVGVDKGVLKVWMHNNKNTLGKVSSMNNMKDVNNHHLHHNVLEHNSSSHNDDINGKNDAVQNRSTNHEYEDDEDNDEVDPDQEGVLPAIVAANGSSSSS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2383591 2384592 + Conep07aG0053000.1 Cone7ag0516 441112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0516 333 MobiDBLite consensus disorder prediction 1 26 - -
Cone7ag0516 333 FunFam Zinc-finger homeodomain protein 2 186 256 - -
Cone7ag0516 333 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Cone7ag0516 333 Gene3D - 186 256 - -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 141 157 - -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 1 19 - -
Cone7ag0516 333 NCBIfam homeobox domain, ZF-HD class 195 252 IPR006455 -
Cone7ag0516 333 SUPERFAMILY Homeodomain-like 182 256 IPR009057 -
Cone7ag0516 333 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 134 194 - -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 278 333 - -
Cone7ag0516 333 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 116 IPR006456 -
Cone7ag0516 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 253 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0516 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0516 Cone-Chr7:2383591 Cone7ag1827 Cone-Chr7:11904214 1.65E-39 dispersed
Cone7ag0516 Cone-Chr7:2383591 Cone7ag0517 Cone-Chr7:2394302 3.69E-17 tandem
Cone16ag0849 Cone-Chr16:9062314 Cone7ag0516 Cone-Chr7:2383591 5.43E-66 wgd
Cone2ag0846 Cone-Chr2:34450051 Cone7ag0516 Cone-Chr7:2383591 2.04E-16 wgd
Cone2ag0193 Cone-Chr2:1019885 Cone7ag0516 Cone-Chr7:2383591 9.33E-77 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone7ag0516 Cone-Chr7:2383591 1.84E-131 wgd
Cone6ag0586 Cone-Chr6:2878195 Cone7ag0516 Cone-Chr7:2383591 3.17E-39 wgd
Cone7ag0516 Cone-Chr7:2383591 Cone9ag0589 Cone-Chr9:2782954 2.61E-43 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46476 PF01612 DNA_pol_A_exo1 5.00E-15 CL0219 Cone TF