Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0516 ATGGATATAACCAGCACCGCCACGAACATAACAAGTTCTCCGGAAGCTCAAAGAGAAACACCAATCAAGATCCAACCCATAAAGCCTCTACCTTTCAGCAACGGAGTACTCAAGCGCCACCACCACCATCTCCAGCATCACCACCAGGTCATCATACCCTCCACAACCACCACCACCACCACCACCACCACCTACAAAGAGTGTCTCAAAAACCATGCGGCCACCTTAGGAGCTCACGCCCTAGATGGCTGTGGTGAATTCATGCCATCTCCCACCGCCACGCCATCTGATCCCACCTCTCTAAAATGCGCCGCTTGCGGCTGCCACCGCAATTTCCACCGCCGCGAACCTGACCCCACCACCGCCACAACTACAGCCACCGCAACCCACGCTATCGAGTACCAATCTCACCACCGCCACCACCCACCGCCTCCACCTCCTCTGCAGCCGAATCGGAGCCCCAATTCAGCTTCCCCCCCTCCAATCTCTTCCTCTTACTACCCATCAGCTCCCCACATGCTCTTAGCTCTATCTACAGGTCCTGGACCCGGGCCAAGCCCGATTAACGGGAGCTCGAATGCCAGGAAGAGGTTTAGAACGAAGTTCAGCCAAGATCAGAAAGAGAGGATGCATGAGTTCGCTGAACGAGTTGGATGGAAGATGCAGAAAAGAGATGAAGAGATCGTGCAAGAATTCTGCCATGAAGTCGGAGTCGATAAAGGTGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTTTAGGGAAGGTATCGTCGATGAATAACATGAAGGATGTTAATAATCATCATCTCCATCATAATGTTCTAGAACATAACAGCAGTTCCCACAACGACGATATCAACGGCAAAAACGATGCCGTTCAGAATCGAAGTACGAATCATGAGTACGAGGATGATGAGGACAATGATGAAGTTGATCCTGATCAGGAAGGAGTACTTCCTGCTATTGTTGCTGCAAACGGGTCTTCTTCTTCTTCTTGA 1002 50.5 MDITSTATNITSSPEAQRETPIKIQPIKPLPFSNGVLKRHHHHLQHHHQVIIPSTTTTTTTTTTYKECLKNHAATLGAHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDPTTATTTATATHAIEYQSHHRHHPPPPPPLQPNRSPNSASPPPISSSYYPSAPHMLLALSTGPGPGPSPINGSSNARKRFRTKFSQDQKERMHEFAERVGWKMQKRDEEIVQEFCHEVGVDKGVLKVWMHNNKNTLGKVSSMNNMKDVNNHHLHHNVLEHNSSSHNDDINGKNDAVQNRSTNHEYEDDEDNDEVDPDQEGVLPAIVAANGSSSSS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2383591 2384592 + Conep07aG0053000.1 Cone7ag0516 441112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0516 333 MobiDBLite consensus disorder prediction 1 26 - -
Cone7ag0516 333 FunFam Zinc-finger homeodomain protein 2 186 256 - -
Cone7ag0516 333 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Cone7ag0516 333 Gene3D - 186 256 - -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 141 157 - -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 1 19 - -
Cone7ag0516 333 NCBIfam homeobox domain, ZF-HD class 195 252 IPR006455 -
Cone7ag0516 333 SUPERFAMILY Homeodomain-like 182 256 IPR009057 -
Cone7ag0516 333 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 134 194 - -
Cone7ag0516 333 MobiDBLite consensus disorder prediction 278 333 - -
Cone7ag0516 333 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 116 IPR006456 -
Cone7ag0516 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 253 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0516 Cone-Chr7:2383591 Cone7ag1827 Cone-Chr7:11904214 1.65E-39 dispersed
Cone7ag0516 Cone-Chr7:2383591 Cone7ag0517 Cone-Chr7:2394302 3.69E-17 tandem
Cone16ag0849 Cone-Chr16:9062314 Cone7ag0516 Cone-Chr7:2383591 5.43E-66 wgd
Cone2ag0846 Cone-Chr2:34450051 Cone7ag0516 Cone-Chr7:2383591 2.04E-16 wgd
Cone2ag0193 Cone-Chr2:1019885 Cone7ag0516 Cone-Chr7:2383591 9.33E-77 wgd
Cone4ag0542 Cone-Chr4:2443471 Cone7ag0516 Cone-Chr7:2383591 1.84E-131 wgd
Cone6ag0586 Cone-Chr6:2878195 Cone7ag0516 Cone-Chr7:2383591 3.17E-39 wgd
Cone7ag0516 Cone-Chr7:2383591 Cone9ag0589 Cone-Chr9:2782954 2.61E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46476 PF01612 DNA_pol_A_exo1 5.00E-15 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0516 - - - 0.0