Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0542 ATGATGGGTTATGAGCTCTTTTCCATCATCCTCTTCGTTTTTTTCTCTTCCTCTGCTTTGCTCTGTCTCTCCTATGAGCCTCGAAATCCTGAAGTGGAGGCTCTGATAAGTATAAAGACGGATTTGCACGATCCTCATGGAGTTCTAAGCAACTGGGATGAAGATTCTGTCGACCCTTGTAGCTGGGCCATGATTACTTGCTCCCCTGAAAACCTCGTCATTGGGCTAGGAGCTCCGAGTCAGGCTCTGTCTGGAACATTGTCCGGTTCGATTGGGAACCTCACAAATCTTCGGCAAGTGCTGTTGCAGAACAACAACATCTCTGGCAGAATTCCACCGGAACTGGGTAATCTTCCGACGCTCCAGACTTTAGATCTCTCTAACAATCGCTTTTCCGGCGTAGTTCCGGTGACCCTCGGTCAGCTAAAGGGTCTCCAGTATCTGAGGCTGAACAACAATAGCTTATCGGGGCCTCTTCCGGTCTCCTTAGCCAAAATCCCTCAGCTTGCCTTCCTGGACCTTTCTTTTAATAATCTCAGTGGGCCCGTGCCGAAGTTCCCGGCAAGAACATTCAATGTAGTGGGAAATCCATTGATTTGTGGAAGGACCTCTGCTGAAGGTTGCTCGGGTTCAGTCACCCTTATCCCACTTTCCTTCTCCATAGAAACATCTCCCGGGAAACAAAAGTCTAAAAAACTAGCCGTTGCCCTTGGAATCAGCCTAAGCTTCACCTTCCTCATACTCCTGGCTCTAGGAATGCTCTGGCGCAGGAAAAGACAGAAGAGCCAGACCATTCTAGACATGAACGACAATCAAGAAGTGGGACAAGGAAGCTTAGGCAACCTCAGAAGCTTCACTTTCAAAGAGCTCCAATTAGCAACAGACCATTTCAACTCTAAGAACATTCTAGGAGCAGGAGGTTTTGGCAATGTTTATAAGGGAAAACTTGGAGACGGAACTATGGTAGCAGTAAAACGGTTGAAGGATGTAACTGGAACAACTGGAGAATCTCAATTCCGGACGGAGCTAGAAATGATCAGCCTTGCTGTTCACCGGAATTTACTCCGGTTAATCGGTTACTGTGCTGCTTCAAATGAACGGCTCTTGGTCTACCCTTACATGTCTAACGGTAGTGTTGCATCCCGGCTAAGAGGAAAACCGGCATTAGATTGGAATACTAGGAAGAGGATCGCAATTGGAGCAGCAAGGGGGCTATTGTATCTACACGAACAATGTGATCCGAAGATAATCCATAGAGATGTGAAAGCAGCTAATGTGCTCTTGGACGATTTTTATGAAGCTATTGTTGGGGATTTCGGACTTGCAAAGCTTCTTGACCATGCAGACTCACATGTCACCACTGCCGTTCGTGGTACTGTGGGCCACATTGCACCGGAATATCTCTCGACCGGCCAATCATCTGAGAAAACGGATGTGTTTGGATTTGGTATTCTCTTATTAGAGCTCATAACGGGAATGAGAGCTCTTGAATTTGGAAAAACAATCAATCAAAAAGGTGTCATGCTTGAATGGGTGAAGAAAATACAACAAGAAAAGAAAGTTGAGCTGCTTGTGGACAGAGAATTGGGGAATAACTATGACCTAATAGAAGTTGGGGAAATGTTACAAGTGGCTCTCTTATGCACACAAAACCTGCCGGCCCACCGACCCAGGATGTCGGAAGTGGTCCGGATGCTGGAAGGAGATGGGCTTGTTGAGAAGTGGGCCGCAGCACAGAATCATAACAACCACCTCCTCAACAGCAACTTAAGCCTCTTTCAGACCGAAAATCCCACGAGCAAGAGTGGATTAAGGGGAACTGTTGCATCGAACCATGATGACAATGATCGGGAACGGTTGACCATGTTCAGTGTAGCAATGGATGAAGATGACGATGAAAGGTCCTTGGATTCATATGCTATGGAGCTCTCTGGTCCGAGGTAA 1944 46.81 MMGYELFSIILFVFFSSSALLCLSYEPRNPEVEALISIKTDLHDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQALSGTLSGSIGNLTNLRQVLLQNNNISGRIPPELGNLPTLQTLDLSNNRFSGVVPVTLGQLKGLQYLRLNNNSLSGPLPVSLAKIPQLAFLDLSFNNLSGPVPKFPARTFNVVGNPLICGRTSAEGCSGSVTLIPLSFSIETSPGKQKSKKLAVALGISLSFTFLILLALGMLWRRKRQKSQTILDMNDNQEVGQGSLGNLRSFTFKELQLATDHFNSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCAASNERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKTINQKGVMLEWVKKIQQEKKVELLVDRELGNNYDLIEVGEMLQVALLCTQNLPAHRPRMSEVVRMLEGDGLVEKWAAAQNHNNHLLNSNLSLFQTENPTSKSGLRGTVASNHDDNDRERLTMFSVAMDEDDDERSLDSYAMELSGPR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2526940 2531095 - Conep07aG0055600.1 Cone7ag0542 441138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0542 647 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cone7ag0542 647 Pfam Protein tyrosine and serine/threonine kinase 300 566 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0542 647 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Cone7ag0542 647 SMART serkin_6 297 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0542 647 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Cone7ag0542 647 SUPERFAMILY Protein kinase-like (PK-like) 279 567 IPR011009 -
Cone7ag0542 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0542 647 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515(InterPro)
Cone7ag0542 647 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 210 - -
Cone7ag0542 647 MobiDBLite consensus disorder prediction 628 647 - -
Cone7ag0542 647 FunFam Somatic embryogenesis receptor-like kinase 1 374 585 - -
Cone7ag0542 647 PRINTS Leucine-rich repeat signature 166 179 - -
Cone7ag0542 647 PRINTS Leucine-rich repeat signature 121 134 - -
Cone7ag0542 647 SMART LRR_typ_2 94 117 IPR003591 -
Cone7ag0542 647 SMART LRR_typ_2 118 141 IPR003591 -
Cone7ag0542 647 SMART LRR_typ_2 142 173 IPR003591 -
Cone7ag0542 647 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Cone7ag0542 647 FunFam Somatic embryogenesis receptor kinase 1 265 373 - -
Cone7ag0542 647 Gene3D Transferase(Phosphotransferase) domain 1 374 586 - -
Cone7ag0542 647 ProSiteProfiles Protein kinase domain profile. 297 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0542 647 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cone7ag0542 647 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 647 - -
Cone7ag0542 647 SUPERFAMILY L domain-like 29 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0542 Cone-Chr7:2526940 Cone8ag0675 Cone-Chr8:6742879 7.63E-197 dispersed
Cone4ag0566 Cone-Chr4:2560803 Cone7ag0542 Cone-Chr7:2526940 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83013 PF00406 ADK 4.90E-47 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0542 - - - 0.0