Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0557 ATGGAAGCCAGTGCCGGACTAGTAGCCGGGTCTCACAACCGGAACGAGCTGGTTGTCATTCGTGGCCACGAAGAGCACAAACCATTGAGGAACTTGGATGGTCAAGTCTGTGAGATTTGTGGAGATGAAGTCGGACTTACTGTAGATGGAGACTTGTTCGTTGCTTGTAATGAGTGCGGTTTTCCGGTTTGCCGGCCTTGTTATGAGTATGAAAGGCGAGAAGGAAGCCAATTGTGTCCCCAATGCAAAACTCGCTATAAACGTCTCAAAGGGAGTCCAAGGGTGGAGGGGGATGACGACGAAGAGGATGTGGATGATATTGAGCATGAATTTAACATTGAAGATGATAGAAGGAAGACACATGAACATATTGCAGAGGAAATGCTTCATGGGAAGATGAGTTATGGTAGAGGTCTAGAGGATGAAGACGCCCAGTTCCCTCCTGTTATTTCTGGTGGCCGATCAGGACCGGTGAGTGGGGAGTTATCAGCACATGGTTATGGGGATCATGCTTTATCTTCTTCACTGCAGAAAAGAGTGCATCCTTATCCGGCTTCTGAACCTGGGAGTGCAAGATGGGATGGAAGGAAAGAGGAAGGCCGGAAAGAGAGAATGGATGATTGGAAACTGCAGCAAGGAAATCTCGGACCTGAATTACCTGATCATGACTTTAATGATCCGGACATGGCCATGATTGATGAAGCAAGGCAACCATTGTCAAGAAAAGTACCTATAGCATCAAGCAAAGTCAATCCTTATAGGATGGTGATTGTGGCTCGTCTTCTTATTCTAGCCTTCTTCCTTCGTTATAGACTTCTGAATCCTGTTCATGACGCCTTTGGGCTCTGGTTAACCTCCGTAATATGCGAAATCTGGTTTGCATTCTCATGGATCCTTGATCAGTTCCCCAAATGGTTCCCTATTGATCGAGAAACCTACTTGGACCGCCTCTCTCTAAGGTATGAAAGAGAGGGCGAACCTAACATGCTTTCTCCAGTGGATGTTTTCGTAAGTACTGTGGACCCTCTGAAGGAACCTCCGCTTGTTACTGCAAACACGGTCCTTTCAATCTTAGCCATGGACTACCCGTTTGACAAGATTTCGTGCTACATTTCTGATGATGGAGCTTCCATGCTCACTTTTGAAGCTCTGTCTGAAACTGCAGAGTTTGCTCGTAAGTGGGTACCTTTCTGTAAGAAATTTTCCATAGAGCCTAGAGCACCTGAAATGTATTTTACAGAGAAGATTGATTACCTCAAAGATAAAGTCCAGCCTACATTCGTCAAGGAACGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAAGTTAGGATAAATTCGCTTGTTGCGAAAGCTTTGAAAGTTCCTCCGGAAGGTTGGATCATGCAAGATGGGACACCATGGCCAGGAAACAACACAAAGGACCACCCTGGTATGATACAAGTCTTTCTGGGTCATAGTGGAGGTCTTGATACTGAAGGAAATGAACTCCCTCGACTCGTTTATGTTTCTCGTGAGAAAAGGCCTGGTTTCCAACATCACAAAAAAGCCGGTGCCATGAATGCACTGGTTCGTGTTTCGGCGGTGCTTACAAATGCTCCTTTCATGCTCAACTTGGATTGTGATCACTATATAAACAACAGCAAAGCAGTTCGTGAGGCAATGTGTTTTTTGATGGACCCACAAACTGGGAAGAAAGTATGCTATGTTCAATTCCCACAAAGATTTGACGGCATTGATAGGCACGATCGTTATGCCAACAGAAACACTGTCTTCTTTGATATCAACATGAAAGGCTTAGACGGGATTCAAGGGCCTGTCTATGTCGGGACAGGTTGTGTTTTCAGGAGACAAGCTTTATATGGTCAGGAACCTCCTAAGAGGCCAAAGCGCCCGAAAATGGTAAGCTGTGATTGCTGCCCATGTTTCGGACAGCGGAAAAAGCTTCACAAGTACTCTAAGCATGGCACCGAAGGAGCTGCTTTGGGTCTTCAAGGTGAAAAAGAGATTTTGATGTCTGAAATGAATTTTGAAAAGAAATTTGGACAGTCTGCGATTTTTGTTACCTCGACTTTGATGGAACATGGTGGGGTCCCTCCTTCCTCCAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTATAGAGCTTGGTTGGATATATGGTTCAATCACGGAAGATATTCTAACGGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCAATATACTGCATGCCAAAGAGACCTGCATTTAAGGGGACGGCTCCAATCAACTTGTCAGATAGGCTCAACCAAGTGCTTAGGTGGGCCCTTGGGTCGATTGAGATCTTTTTCAGTCACCACTGTCCTCTTTGGTATGGCTACAAGGGAGGGAGCCTGAAATGGCTAGAGCGATTTGCATATGCTAACACAACTATCTACCCCTTCACTTCACTCCCTCTCCTTGCCTATTGTACCCTCCCTGCCATTTGCCTTCTCACAGATAAATTCATTATGCCACCGATAAGTACTTTTGCAAGTCTTTTCTTCATTGCTCTGTTTCTTTCAATCTTTGCAACTGGAATTCTCGAGCTTAGATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAGCAATTCTGGGTGATAGGTGGTGTTTCAGCTCATCTGTTTGCTGTTGTACAAGGACTTTTGAAGGTTTTGGCTGGAATTGATACTAATTTCACTGTTACATCAAAAGCAACAGATGATGAGGATTTTGGAGAATTATATGCCTTTAAGTGGACAACTTTGTTGATTCCTCCAACTACAATATTAATCATCAATCTTGTTGGAGTTGTTGCCGGGATTTCGGATGCTATAAACAACGGCTATCAATCATGGGGTCCCCTATTTGGGAAGCTCTTCTTTGCATTCTGGGTGATTGTTCATCTCTATCCATTCCTTAAGGGTTTAATGGGAAGGCAAAACCGGACACCCACTATAGTTGTGATATGGTCCGTGCTCTTGGCTTCAATCTTCTCCTTGCTCTGGGTCCGGATTGACCCATTTGTGATGAAAACCAAGGGGCCAGATGTTAAGCAATGCGGACTCAATTGCTGA 3120 44.74 MEASAGLVAGSHNRNELVVIRGHEEHKPLRNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDDRRKTHEHIAEEMLHGKMSYGRGLEDEDAQFPPVISGGRSGPVSGELSAHGYGDHALSSSLQKRVHPYPASEPGSARWDGRKEEGRKERMDDWKLQQGNLGPELPDHDFNDPDMAMIDEARQPLSRKVPIASSKVNPYRMVIVARLLILAFFLRYRLLNPVHDAFGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDVFVSTVDPLKEPPLVTANTVLSILAMDYPFDKISCYISDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFTEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINSLVAKALKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGQEPPKRPKRPKMVSCDCCPCFGQRKKLHKYSKHGTEGAALGLQGEKEILMSEMNFEKKFGQSAIFVTSTLMEHGGVPPSSSPAALLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGYKGGSLKWLERFAYANTTIYPFTSLPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDVKQCGLNC 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2678513 2682833 + Conep07aG0057100.1 Cone7ag0557 441153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0557 1039 CDD mRING-HC-C4C4_CesA 35 85 - -
Cone7ag0557 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 450 623 IPR029044 -
Cone7ag0557 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Cone7ag0557 1039 MobiDBLite consensus disorder prediction 179 204 - -
Cone7ag0557 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 863 IPR029044 -
Cone7ag0557 1039 FunFam Cellulose synthase 450 624 - -
Cone7ag0557 1039 FunFam Cellulose synthase 19 110 - -
Cone7ag0557 1039 Pfam Cellulose synthase 333 1033 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone7ag0557 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cone7ag0557 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 239 1008 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone7ag0557 1039 SUPERFAMILY RING/U-box 22 107 - -
Cone7ag0557 1039 Coils Coil 431 451 - -
Cone7ag0557 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1326 Cone-Chr3:32196988 Cone7ag0557 Cone-Chr7:2678513 8.48E-133 dispersed
Cone6ag0945 Cone-Chr6:4926527 Cone7ag0557 Cone-Chr7:2678513 0 dispersed
Cone6ag1303 Cone-Chr6:10472077 Cone7ag0557 Cone-Chr7:2678513 0 dispersed
Cone7ag0557 Cone-Chr7:2678513 Cone7ag1458 Cone-Chr7:10292094 0 dispersed
Cone4ag0586 Cone-Chr4:2691877 Cone7ag0557 Cone-Chr7:2678513 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0557 K10999 - vvi:100248512 1928.29