Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0579 ATGGGCTGTGGCACGGTGCCCGGAGACGGCAGCGTTGACCGGTTTCCGATCGGTATGCGCGTCCTTGCGGTGGATGACGACCCTATCTGCCTTAAAGTCCTCGAAACTCTGCTTCGCAAATGCCACTACTACGTTGAGACAACAAATCAGGCAATTGAAGCCTTGAGAATGTTAAGGGAAAACAGAAACAAGTTTGATTTAGTAATTAGTGATGTAAACATGCCAGACATGGACGGTTTCAAGCTCCTTGAGCTACTAGGACTTGAAATGGACCTTCCGGTTATAATGTTATCTGCCCATAGTGATACAAAACTCGTGATGAAGGGAATTACACATGGGGCATGTGACTATTTATTGAAACCGGTTAGGATAGAGGAGCTCAAGAACGTATGGCAGCATGTGGTTCGCAGAAAGAAGGTGGACCCCATGGATCAAAACAAGGCTGTTCGGAATGGAAATGGTGAAAGTGGAGATGAGCATGGTTTCTCAATGGGAGGTGGTAATGAAGTAATTTGCGGGAAAAGGAAGGATAAAAATGAAGATGAGGATGAAGAGGGTGAAGAAGAGAGTAGTGATTGTGAGAATGATGATCCCTCTACTCAGAAGAAACCGAGGGTAGTGTGGTCTATTGAGTTGCATAGGAAGTTTGTTGCAGCAGTTGATCAATTAGGCCTCGAAAAAGCGGTTCCGAAGAAAATCCTAGATGTGATGAATGTGGAGGGACTTACTAGAGAAAATGTAGCAAGCCATTTGCAGAAATATAGGCTATACCTAAAGAGAATAAGAGACAATCAGCAAGCAAACATGGATGCAACATTTAACAGTAGAGATGCCTCTTATATCCCTATAGGTTCATTCAATGGGTTCAGAGATTTACGTGCATTAGGTGGTTCACGCCGGCTTTCAAACAACACTATGGTATCATCATATTCATCAAGTGGAATCCTCGGTAGATCCAACTCTGTTACTGGACTAAGCCTGCATGGACTCCAATCTTCGGGATTGATCCAACGGAATTCAGCCCAAAGTCTAAACAACCTGATCAGTACTCTCCAAACTGGTTTACAAGGGATTTCAACATCATTAGATTTCGGTCGGTTACAACAGACCAAGTCAGCTCCTCAAACTAGAGAGCTGAATCCCAGTAATAATGATTTATCAGGTGGGCCTACTAGCTTCCTGAATAATGTTTTTGGTGGTTGTTCAATGGATTCCCGAACACAACGGATGCATGCATTGAATGATAGTAGGAAAGTCGACTTCAGCAGAAGCGGTTGTAATAACTTTTTGGGTAGTTATGAATACCGTGAAAACTGGCAGGGGTCGAATCCATCGGTATTGAGTGATAGTTATGCTCATGATCAAGGCTTATTACTCGATAATGCTATTCAATCCACTATGAATAATATGACACCTAGGCAAAGGTGGGAAGAACATAGTAGTATTAGTGCCATAAATTCTCTTCCTCCAGCCAATGAGGTTATGTGCGGGCATGTTAACCAATTAAATGGATCTGAATTCATTCAGCCAAATACGGTCGAGAAACAAGCTTTTGATACGCATGATGGATTCCTTCGGAGTAGTTTTGGGTCCTTGGATGACATAATCAATGCCATCGACAAGCCATTACAAGGTGGAAAGGAGCGAGTCGATAAAACAGAGGCACAACCTCACAATCCAACACCATGGAGGTGCTTGTATCATGATTAA 1710 43.04 MGCGTVPGDGSVDRFPIGMRVLAVDDDPICLKVLETLLRKCHYYVETTNQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELLGLEMDLPVIMLSAHSDTKLVMKGITHGACDYLLKPVRIEELKNVWQHVVRRKKVDPMDQNKAVRNGNGESGDEHGFSMGGGNEVICGKRKDKNEDEDEEGEEESSDCENDDPSTQKKPRVVWSIELHRKFVAAVDQLGLEKAVPKKILDVMNVEGLTRENVASHLQKYRLYLKRIRDNQQANMDATFNSRDASYIPIGSFNGFRDLRALGGSRRLSNNTMVSSYSSSGILGRSNSVTGLSLHGLQSSGLIQRNSAQSLNNLISTLQTGLQGISTSLDFGRLQQTKSAPQTRELNPSNNDLSGGPTSFLNNVFGGCSMDSRTQRMHALNDSRKVDFSRSGCNNFLGSYEYRENWQGSNPSVLSDSYAHDQGLLLDNAIQSTMNNMTPRQRWEEHSSISAINSLPPANEVMCGHVNQLNGSEFIQPNTVEKQAFDTHDGFLRSSFGSLDDIINAIDKPLQGGKERVDKTEAQPHNPTPWRCLYHD 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2779087 2781883 + Conep07aG0059300.1 Cone7ag0579 441175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0579 569 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160(InterPro)
Cone7ag0579 569 PIRSF RR_ARR_type-B 4 560 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone7ag0579 569 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160(InterPro)
Cone7ag0579 569 MobiDBLite consensus disorder prediction 369 388 - -
Cone7ag0579 569 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Cone7ag0579 569 Gene3D - 19 171 - -
Cone7ag0579 569 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Cone7ag0579 569 CDD REC_typeB_ARR-like 21 135 - -
Cone7ag0579 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Cone7ag0579 569 SUPERFAMILY CheY-like 18 139 IPR011006 -
Cone7ag0579 569 Gene3D - 199 262 - -
Cone7ag0579 569 SMART REC_2 19 131 IPR001789 GO:0000160(InterPro)
Cone7ag0579 569 MobiDBLite consensus disorder prediction 142 202 - -
Cone7ag0579 569 FunFam Two-component response regulator 199 262 - -
Cone7ag0579 569 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677(InterPro)
Cone7ag0579 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 262 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0579 Cone-Chr7:2779087 Cone8ag0716 Cone-Chr8:7215291 3.16E-81 dispersed
Cone9ag0583 Cone-Chr9:2748275 Cone7ag0579 Cone-Chr7:2779087 2.28E-10 dispersed
Cone16ag0459 Cone-Chr16:6854189 Cone7ag0579 Cone-Chr7:2779087 1.60E-132 wgd
Cone2ag0549 Cone-Chr2:3080122 Cone7ag0579 Cone-Chr7:2779087 3.60E-130 wgd
Cone20ag0334 Cone-Chr20:1496150 Cone7ag0579 Cone-Chr7:2779087 1.91E-67 wgd
Cone4ag1755 Cone-Chr4:12894931 Cone7ag0579 Cone-Chr7:2779087 2.84E-116 wgd
Cone4ag0611 Cone-Chr4:2810489 Cone7ag0579 Cone-Chr7:2779087 0.00E+00 wgd
Cone7ag0579 Cone-Chr7:2779087 Cone7ag1672 Cone-Chr7:11219297 7.93E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46481 PF02970 TBCA 9.80E-29 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0579 K14491 - csv:101213687 463.381