Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0587 ATGCAGCCAAGCAGTAGCAGAGAAATGCAAGGAATGAATTCCATTTTAAACCAGTCTCAGATGTCCCTACAAGACCTTCATCATCATCATCAAAATCAAAATCAAATCCAGCCTTCCTCTCACGATGATTTTCTCGAGCAAGTGCTTTCTACCATTAACACTTCCTGTTCATGGCCAGACCTCAAATCTCCATGGGACCTCAATCCTTCGAATCCGTCCTCCATCAACGGTCACGGCAAGCACGCAGCACCAGACCTTTCCTCCGATGAAATTCCGGCATCTGACCGTGAAAATGCTTCATTTCCGTTCGACGAGCCTGATAACAGCCTCGCTTTGAAGCTCCGTGGCCACCAGATCAGCGGCAGCGGCACCAACTCCCCGGCCATGAAGGCTGCAGCGGCGATGATGCTTCATCAGCAGCTGTTAATGTCACGTGGAGGAATCTCCGGCGACCCCGATCTTCTTCCTCCTATGCCCATGTCTTTGAATGGGGGTGATATGGAGCTCTCTCAGAACGACGTCGTAGATGGACCGTCTTCTTTCAAATCTCCAACTCAGGGTGGTGCGATGCAGGCACCGAAGTTTGGGGCTACCGGACCGGCAGCGAACCAAGGTCCGGTAAGCGGTCCAGCTGGAGGTGCACCGGGTCAACCAAAACAGAGGGTCAGGGCTCGTAGAGGTCAAGCCACTGATCCACACAGTATTGCCGAAAGATTAAGGAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTGGTTCCCAATGCGAATAAGACAGACAAAGCATCGATGCTAGATGAGATCATAGATTATGTCAAATTCCTCCAGCTTCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGTGGTGCAGCTGCTGTTACTCCCCTTGTTGCTGATATGTCCACAGAGGGAGGTGGGGACTGTGTCCAATCCAGTGGGAACATCAACGGTAGCGGGGTCCACACTCGCGGTGGCATTGGCGGCGGGGGAGGATTTGACACCGCGACCCAACCAGCCACCGCCGATCAGAGCATGAGTATGACGGAGAACCAAGTGGCGAAGCTCATGGAGGAGGACATGGGATCCGCCATGCGGTACCTCCAAGGGAAAGGCCTCTGCCTCATGCCCATCTCTCTGGCCACTGCCATCTCAACCGCCACGTGTAACTCTAGGAACCCCACGATCGGTCATCAGAGTAACCACCCGTCCAACGGTGCTGCTGTTGGTCATCACGATAGGCCCCCCTCGCCCAGCTTGTCCGTCTCGACTGTTCAGTCCGCCGATGCTTCCGGTAAAGGCAATGCTTCCATTTCCAAATCGTGA 1329 53.57 MQPSSSREMQGMNSILNQSQMSLQDLHHHHQNQNQIQPSSHDDFLEQVLSTINTSCSWPDLKSPWDLNPSNPSSINGHGKHAAPDLSSDEIPASDRENASFPFDEPDNSLALKLRGHQISGSGTNSPAMKAAAAMMLHQQLLMSRGGISGDPDLLPPMPMSLNGGDMELSQNDVVDGPSSFKSPTQGGAMQAPKFGATGPAANQGPVSGPAGGAPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVTPLVADMSTEGGGDCVQSSGNINGSGVHTRGGIGGGGGFDTATQPATADQSMSMTENQVAKLMEEDMGSAMRYLQGKGLCLMPISLATAISTATCNSRNPTIGHQSNHPSNGAAVGHHDRPPSPSLSVSTVQSADASGKGNASISKS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2818945 2823267 + Conep07aG0060100.1 Cone7ag0587 441183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0587 442 SMART finulus 234 283 IPR011598 GO:0046983(InterPro)
Cone7ag0587 442 MobiDBLite consensus disorder prediction 418 442 - -
Cone7ag0587 442 FunFam Transcription factor bHLH66 225 290 - -
Cone7ag0587 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 288 IPR036638 GO:0046983(InterPro)
Cone7ag0587 442 MobiDBLite consensus disorder prediction 67 97 - -
Cone7ag0587 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983(InterPro)
Cone7ag0587 442 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 384 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone7ag0587 442 MobiDBLite consensus disorder prediction 394 442 - -
Cone7ag0587 442 Gene3D - 223 285 IPR036638 GO:0046983(InterPro)
Cone7ag0587 442 Pfam Helix-loop-helix DNA-binding domain 233 278 IPR011598 GO:0046983(InterPro)
Cone7ag0587 442 MobiDBLite consensus disorder prediction 325 349 - -
Cone7ag0587 442 MobiDBLite consensus disorder prediction 175 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0673 Cone-Chr10:3253192 Cone7ag0587 Cone-Chr7:2818945 1.07E-53 dispersed
Cone16ag0423 Cone-Chr16:6617797 Cone7ag0587 Cone-Chr7:2818945 5.08E-88 dispersed
Cone2ag0572 Cone-Chr2:3296185 Cone7ag0587 Cone-Chr7:2818945 2.87E-86 dispersed
Cone3ag0699 Cone-Chr3:3570636 Cone7ag0587 Cone-Chr7:2818945 7.56E-41 dispersed
Cone5ag0543 Cone-Chr5:2302543 Cone7ag0587 Cone-Chr7:2818945 6.80E-51 dispersed
Cone5ag1472 Cone-Chr5:9790664 Cone7ag0587 Cone-Chr7:2818945 1.70E-13 dispersed
Cone7ag0587 Cone-Chr7:2818945 Cone8ag1204 Cone-Chr8:10239336 3.32E-18 dispersed
Cone4ag0604 Cone-Chr4:2769142 Cone7ag0587 Cone-Chr7:2818945 4.76E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46482 PF04859 DUF641 3.40E-45 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0587 - - - 0.0