Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0635 ATGGTGAAGTCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGCTCCTGGGTTTCTGAAATTCGTCACCCATTACTGAAGAGAAGGGTTTGGCTAGGCACATTTGAGACAGCAGAAGAAGCAGCAAAAGCCTATGACCAAGCAGCAATCTTAATGAGCGGTCGAAATGCCAAAACCAATTTCCCGACGCATCAAACGGAAAATGAAGAGCCCTCGACCTTAATAACCGACGAATTCTCTTCCTTTGCTGCCGCCTTCTCCTCATCTTCGCCAAAGGGATTATCAGAAATACTTCACGCAAAGCTACGTAAATGTAGCAAAACCCTATCACCATCAATGACATGTTTGAGGCTTGACACGGAGAATTCTCACATCGGAGTGTGGCAGAAGCGGGCGGGGACCACACCAAGCTCTAATCATGATTCGAACTGGATCATGACTGTTCCAATGGGGAAGAAGAAAAAGATTGTGGCTAATGATCATGCTGTAGATGAGCATGATCAATCTCAGGCATTGGTTGAAGCGCCAAATCAAGAAGTTCGATCAGAAATGGAAGAAGAAGATAGAATGGCGTTACAAATGATTGAGGAGTTGCTTAATTGGAACAGTCCTGGTGCTTCTTTGGAGATTCAACAAGGGGAAGAGACCTGTTGTCTTTAG 663 45.4 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDQAAILMSGRNAKTNFPTHQTENEEPSTLITDEFSSFAAAFSSSSPKGLSEILHAKLRKCSKTLSPSMTCLRLDTENSHIGVWQKRAGTTPSSNHDSNWIMTVPMGKKKKIVANDHAVDEHDQSQALVEAPNQEVRSEMEEEDRMALQMIEELLNWNSPGASLEIQQGEETCCL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3242891 3244185 + Conep07aG0065700.1 Cone7ag0635 441231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0635 220 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cone7ag0635 220 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 152 IPR050913 -
Cone7ag0635 220 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0635 220 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0337 Cone-Chr20:1511034 Cone7ag0635 Cone-Chr7:3242891 6.07E-31 dispersed
Cone4ag1757 Cone-Chr4:12906148 Cone7ag0635 Cone-Chr7:3242891 1.15E-30 dispersed
Cone7ag0635 Cone-Chr7:3242891 Cone7ag1675 Cone-Chr7:11230679 1.26E-29 dispersed
Cone16ag0650 Cone-Chr16:8006738 Cone7ag0635 Cone-Chr7:3242891 3.23E-63 wgd
Cone16ag0813 Cone-Chr16:8830663 Cone7ag0635 Cone-Chr7:3242891 4.28E-74 wgd
Cone4ag1792 Cone-Chr4:13040697 Cone7ag0635 Cone-Chr7:3242891 2.00E-65 wgd
Cone7ag0635 Cone-Chr7:3242891 Cone7ag1701 Cone-Chr7:11339494 6.78E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46485 PF00249 Myb_DNA-binding 1.60E-13 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0635 - - - 0.0