Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0677 ATGGGGGAAGGAGAGGGAGAAGGCGATTTCCCTCCGAAGAATGTTCAATCCGATGGTGCGCCGCCTAGCAACGCTGTGTCGTCGGAAATTCCTGCTAAGAAGCTTGCAAGGCAGCTGGATTTTACGAGATTTGGAGGAGGAGTAGTAGTTTCAGGAAGTGCGGTTTTTCCGGAGCATCCTCAGCCTCAGTCATCGTCACAGTCTCAGTCGCAACCTGTCAAGGTGTCACGGAGTACTTCCTTACAGTTGCCGTCGCAATCTCAGCCACAGATGGTGGCCATGCCTGTGGGCCTCCAGGTCCAACATTCTTCAACTAGGCCCGTAAAACCAGAGTCCCCAAAGTCAAGACCAAGATCCAATGTTGAATCGCAAGAAGGCACTCCGAAAAAGCAGAAGCAGTGTAACTGTAAACATTCACGATGCTTAAAGTTGTACTGTGAATGTTTTGCATCAGGAATATACTGTGATGGGTGTAATTGCAATAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGAAGAGAGGCGGTAGAAGCCACTCTAGAGCGCAATCCGAATGCATTCCGACCAAAAATTGCAAGTAGTCCACATGGAACACGAGATAACCGGGAGGAAGCTGGAGATGTTTTACTATTGGGAAAACACAACAAAGGATGCCATTGTAAGAAATCGGGGTGTCTGAAAAAGTATTGTGAGTGCTTCCAAGCAAACATTCTTTGCTCTGATAATTGTAAATGCATGGACTGTAAAAATTTTGAGGGAAGTGAGGAGAGACAGGCTCTTTTCCATGGCGACCATGGAAACAACATTGCATATATTCAGCAGGCAGCCAATGCAGCAATAACCGGAGCCATTGGATCCTCTGGCTATGCACCATCTCCTCCAGTTTCCAAGAAAAGAAAAAGTCACGAGCTCTTCTGTGGACCAAATGCAAAGGATCCATCCATTCATAAGCTTGCACAATATCAACAGGTGAACAATGTTCGGGCAGCGGCCCCCTCTTTGTTGCATCCTGTCCCAGGCACTCGTATTGGTGGTCCTGCAACACTAGGTCCTTCAAAGTTCACATACAGGTCTTTGTTAGCAGACATCATTCAACCTCAGGACTTGAAGGAGCTTTGCTCCGTTTTGGTGGTCTTATCAAGTGAAGCAGCTAAGACCCTTGCAGAACAAAAAAATGCAACAGAAAAGCGAGCAGAGGATCAGGCACAGACTTCTGTTGCTTCTTTAACTCAAAATGGGTTGCAGAGCCAGAAGGAACTGGGCGTGAAAGCAGTGGCTGATCGTTCAAGTGCAAACCAAGACAGTAAAGCTGATGCAGATGATTCAAGTTCAGAGGGTTCGGATGTGCCTAAAACAAGGCCAATGTCCCCTGGGACCTTAGCTTTGATGTGTGATGAGCAAGACCCAATGTTCATGGCAGCTGCTTCTCCTACTGGGTTTGTGGGCCATAGCTGCAGTACATCATCACAGTTTCCTTACGGACAAGACATGACCGAAGTCTATGCTGAGCAGGAGCGAATTGTCATGACAAAGTTTCGGGATTGTCTTAACCGGCTCATCACTCTTGGGGAGATTAAAGAAACAAATCGCTCGTCTTTTGCTAGAAATGAATTAGGGAGCGAGAAAGACCAGCATATCAATGGCAACGCAAATACGAGAAGTGAAAGTGGAAGTCAACCAAGACCGCCCACTAGTAATGGGGTCCTGAAATCTGTTATTCCTTTTACGTCCAAGACATCACAGATAATTACAGAATTGACTGCTAAGCAGGATTCAATTCCGACTACCCCATCGATGCCCGAAAATGGGAATAGCAAGCCATGGATTGAGAAAGAGATGTAG 1845 46.29 MGEGEGEGDFPPKNVQSDGAPPSNAVSSEIPAKKLARQLDFTRFGGGVVVSGSAVFPEHPQPQSSSQSQSQPVKVSRSTSLQLPSQSQPQMVAMPVGLQVQHSSTRPVKPESPKSRPRSNVESQEGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCNNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNREEAGDVLLLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNIAYIQQAANAAITGAIGSSGYAPSPPVSKKRKSHELFCGPNAKDPSIHKLAQYQQVNNVRAAAPSLLHPVPGTRIGGPATLGPSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKTLAEQKNATEKRAEDQAQTSVASLTQNGLQSQKELGVKAVADRSSANQDSKADADDSSSEGSDVPKTRPMSPGTLALMCDEQDPMFMAAASPTGFVGHSCSTSSQFPYGQDMTEVYAEQERIVMTKFRDCLNRLITLGEIKETNRSSFARNELGSEKDQHINGNANTRSESGSQPRPPTSNGVLKSVIPFTSKTSQIITELTAKQDSIPTTPSMPENGNSKPWIEKEM 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3722160 3727389 + Conep07aG0070000.1 Cone7ag0677 441273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0677 614 MobiDBLite consensus disorder prediction 1 31 - -
Cone7ag0677 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 217 251 IPR005172 -
Cone7ag0677 614 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 166 IPR005172 -
Cone7ag0677 614 ProSiteProfiles CRC domain profile. 130 254 IPR005172 -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 392 462 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 51 87 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 57 87 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 400 419 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 544 573 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 588 614 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 99 131 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 588 604 - -
Cone7ag0677 614 PANTHER TESMIN/TSO1-RELATED 38 528 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone7ag0677 614 SMART CXC_2 214 255 IPR033467 -
Cone7ag0677 614 SMART CXC_2 129 169 IPR033467 -
Cone7ag0677 614 Coils Coil 164 184 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 534 573 - -
Cone7ag0677 614 MobiDBLite consensus disorder prediction 434 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0677 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0303 Cone-Chr2:1559684 Cone7ag0677 Cone-Chr7:3722160 2.09E-223 dispersed
Cone4ag0261 Cone-Chr4:1167255 Cone7ag0677 Cone-Chr7:3722160 5.41E-32 dispersed
Cone7ag0270 Cone-Chr7:1123293 Cone7ag0677 Cone-Chr7:3722160 9.75E-31 dispersed
Cone16ag0733 Cone-Chr16:8445233 Cone7ag0677 Cone-Chr7:3722160 1.06E-214 wgd
Cone4ag0740 Cone-Chr4:4067839 Cone7ag0677 Cone-Chr7:3722160 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0261 . 311 577 CPP Transcription Factor Family AT3G22760 56.1 3.5e-82 303.1
Cone20ag0663 . 489 635 CPP Transcription Factor Family AT3G22760 58.6 8.3e-47 185.7
Cone17ag1032 . 511 652 CPP Transcription Factor Family AT3G22760 59.9 5.4e-46 183.0
Cone4ag0740 . 1 601 CPP Transcription Factor Family AT2G20110 52.0 4.8e-144 508.8
Cone7ag0677 . 100 532 CPP Transcription Factor Family AT2G20110 61.2 1.0e-138 491.1
Cone16ag0733 . 71 493 CPP Transcription Factor Family AT2G20110 57.2 4.8e-128 455.7
Cone4ag0740 . 1 567 CPP Transcription Factor Family AT4G29000 53.5 1.9e-154 543.5
Cone7ag0677 . 1 568 CPP Transcription Factor Family AT4G29000 53.8 2.4e-152 536.6
Cone2ag0303 . 1 542 CPP Transcription Factor Family AT4G29000 51.5 2.1e-145 513.5
Cone16ag0733 . 18 493 CPP Transcription Factor Family AT4G29000 55.1 1.3e-142 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46488 PF13181 TPR_8 0.015 CL0020 Cone TF