Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0705 ATGTCTTGGCAAACTTACGTCGATGACCATCTGATGTGCGAAATCGATGGCAATCATCTCACAGCTGCCGCCATCATCGGACACGACGGCAGCGTCTGGGCTCAGAGCGCTACCTTTCCCCAGTTCAAGCCTGAAGAAATAACTGCCATACTGAACGACTTTAACGAACCCGGAACACTTGCTCCCACCGGATTGTATCTTGGTGGTGCAAAATACATGGTGATCCAGGGAGAGGCCGGAGCTGTCATTCGTGGAAAGAAGGGGGCTGGTGGTGTTACGGTCAAAAAGACCAACCAAGCATTGATCATAGGTGTCTATGATGAACCAATGACTCCTGGCCAGTGCAACATGATCGTTGAAAGGCTTGGTGATTATCTTATTGAACAGGGCCTGTAG 396 50.0 MSWQTYVDDHLMCEIDGNHLTAAAIIGHDGSVWAQSATFPQFKPEEITAILNDFNEPGTLAPTGLYLGGAKYMVIQGEAGAVIRGKKGAGGVTVKKTNQALIIGVYDEPMTPGQCNMIVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4046613 4048522 + Conep07aG0073200.1 Cone7ag0705 441301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0705 131 FunFam Profilin 1 131 - -
Cone7ag0705 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cone7ag0705 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cone7ag0705 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Cone7ag0705 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cone7ag0705 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cone7ag0705 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cone7ag0705 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0755 Cone-Chr4:4223685 Cone7ag0705 Cone-Chr7:4046613 1.56E-77 dispersed
Cone4ag0756 Cone-Chr4:4240613 Cone7ag0705 Cone-Chr7:4046613 4.66E-92 dispersed
Cone7ag0705 Cone-Chr7:4046613 Cone7ag1163 Cone-Chr7:8674589 1.02E-86 dispersed
Cone7ag0704 Cone-Chr7:4037336 Cone7ag0705 Cone-Chr7:4046613 4.47E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0705 K05759 - sly:543830 249.595