Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0709 ATGACGGATCACCTCCTAATCAACTCCGAGCCGGAGCCGAGCACCACAACTAACTCCTCCGTGTCCTCCTCTTCTTCACCCTTTTCATCTGGATCATCCTTACTAAACCGATTAGCACTCAAACAAACTCGATCGACCAGCCCGGCACAGAAGAAACGGCCCAAGAAGCGAACCCGAGATCATGACAACAACAGCAACGACGCCACCAAGCACCCAGTTTACCGGGGGATACGAATGCGGGCTTGGGGCAAATGGGTGTCTGAAATCCGCGAGCCAAGAAAGAAAAACCGGATATGGCTCGGTACTTTCTCAACGGCCGAGATGGCTGCCAGGGCCCACGACGTAGCCGCCTTGAGCATCAAAGGCAACTCAGCCATCCTAAACTTTCCAGAACTAGTCGATTCTCTTCCCCGGCCTGCCTCAAAATCTCCTCAAGACGTGCAAGCTGCCGCTGCTAAAGCCGCCTCGATGGTGGTCCCCACTACCGATACTGTCAAGCATTCAATGGTATCGACTTCCCCCACATCATCATTGTCTCAGGATTCAACGGTGGGGTCAGCGCCGGAGGAGCTGAGTGAGATAGTGGAGCTACCGAGTTTGGTCGGGGCGAATTATGACTCGCCTGATTGGCCTAACGAGTTAGTGTTTATGGACTCAGTAGTGGAGGAATGGCTCTGTCCTCATCCCTGGTATCATCAGTACTATAGCATTAATGGTGATGAGAGTTATGGCCATTTTAGGGATCACATTACAGCAGAGACATTTGAGGCCTTTTTGTGGCAACATTAA 789 51.84 MTDHLLINSEPEPSTTTNSSVSSSSSPFSSGSSLLNRLALKQTRSTSPAQKKRPKKRTRDHDNNSNDATKHPVYRGIRMRAWGKWVSEIREPRKKNRIWLGTFSTAEMAARAHDVAALSIKGNSAILNFPELVDSLPRPASKSPQDVQAAAAKAASMVVPTTDTVKHSMVSTSPTSSLSQDSTVGSAPEELSEIVELPSLVGANYDSPDWPNELVFMDSVVEEWLCPHPWYHQYYSINGDESYGHFRDHITAETFEAFLWQH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4093784 4094700 + Conep07aG0073600.1 Cone7ag0709 441305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0709 262 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 Gene3D AP2/ERF domain 73 132 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 Pfam AP2 domain 72 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 SMART rav1_2 73 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 CDD AP2 74 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag0709 262 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677(InterPro)
Cone7ag0709 262 MobiDBLite consensus disorder prediction 1 73 - -
Cone7ag0709 262 MobiDBLite consensus disorder prediction 7 47 - -
Cone7ag0709 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 53 202 IPR051032 -
Cone7ag0709 262 FunFam Ethylene-responsive transcription factor 2 72 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1260 Cone-Chr20:8254933 Cone7ag0709 Cone-Chr7:4093784 9.92E-52 dispersed
Cone4ag0835 Cone-Chr4:5408866 Cone7ag0709 Cone-Chr7:4093784 2.32E-24 dispersed
Cone4ag1168 Cone-Chr4:9947641 Cone7ag0709 Cone-Chr7:4093784 9.14E-35 dispersed
Cone4ag1392 Cone-Chr4:11231228 Cone7ag0709 Cone-Chr7:4093784 2.00E-20 dispersed
Cone6ag0657 Cone-Chr6:3328609 Cone7ag0709 Cone-Chr7:4093784 4.82E-36 dispersed
Cone6ag0748 Cone-Chr6:3795049 Cone7ag0709 Cone-Chr7:4093784 3.45E-30 dispersed
Cone7ag0709 Cone-Chr7:4093784 Cone7ag0894 Cone-Chr7:6995942 4.18E-42 dispersed
Cone4ag0949 Cone-Chr4:8070103 Cone7ag0709 Cone-Chr7:4093784 4.75E-66 wgd
Cone4ag0772 Cone-Chr4:4457176 Cone7ag0709 Cone-Chr7:4093784 4.34E-152 wgd
Cone7ag0709 Cone-Chr7:4093784 Cone7ag1181 Cone-Chr7:8804049 1.58E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46492 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0709 K09286 - csv:101219745 230.335