Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0750 ATGAAGAAGGGATGCTTAAGGCCCAACAATCTCCACCTTAATCTCCCTCCACCGGATGATCTTTCCAAGTTCCTAACCAAAAGTGGCACGTTTGTGGAAGGAGATCTTCTTGTGAACAAAGATGGGGTTCGGATTCTCTCTCATGGTGAAACTGAATCTGTTCCACCTATTAAGCCAACAGATAACCAGTTGAGTTTAGAAGATATAGATAGGATTAAAGTCATTGGAAAAGGAAATGGTGGAATTGTTCAATTGGTTCGACATAAATGGACTGGCCAGTTTTTTGCATTGAAGGTAATTCAAATGAACATAGAGGAGTCTCACAGAAAACAAGTTGCAAAGGAACTGAAAATAAATCAATCGGCACAATGCCAATATATAGTGGTTTGTTATCAGTGTTTGTATTATGATGGCTCCATATATATAATTTTAGAGTACATGGATGGAGGATCTCTTTTAGACTTTCTCAAGAAAGTTAAGTCAATTCCTGAGCCTTATCTTGCTGCCATTTGCAAGCAGGTGTTGAAGGGCTTGTTGTACCTTCATCATGAAAAACATGTTATCCATAGAGATCTAAAACCTTCAAATCTGCTAATAAACCATAAAGGGGAGGTCAAGATTGCTGACTTTGGTGCTAGTGCGATACTGGAGAGCACATCAGGACAAGCCCATACTTTTCTTGGGACATGCAACTATATGTCTCCGGAGAGAATAAGGGCAAGCAAGTATGATAGCAAAAGCGATATATGGAGCTTAGGATTGGTAATGCTTGAATGTGCAACGGGTCGGTTTCCTTATTCTCCACCAGAGGAAGCTGAAGGATGGGTCAACGTCTTTGAGCTCATGGAGACCATTGAAGGTCAACCACCACCTTCTGCTCCTTCTGACCAATTCTCTACGGAATTCTGCTCATTTATTTCTGCATGTGTACAAAAGAACCCGTTTGAAAGACCGTCCGCGAGGGAACTCATGATGCATCCCTTCATTAACTTGTATGAAGATTTGGATATTGATCTCTCATCTTACTTCACCGATTCAGGATCTCCACTTGCTGTTTTTTAA 1062 40.77 MKKGCLRPNNLHLNLPPPDDLSKFLTKSGTFVEGDLLVNKDGVRILSHGETESVPPIKPTDNQLSLEDIDRIKVIGKGNGGIVQLVRHKWTGQFFALKVIQMNIEESHRKQVAKELKINQSAQCQYIVVCYQCLYYDGSIYIILEYMDGGSLLDFLKKVKSIPEPYLAAICKQVLKGLLYLHHEKHVIHRDLKPSNLLINHKGEVKIADFGASAILESTSGQAHTFLGTCNYMSPERIRASKYDSKSDIWSLGLVMLECATGRFPYSPPEEAEGWVNVFELMETIEGQPPPSAPSDQFSTEFCSFISACVQKNPFERPSARELMMHPFINLYEDLDIDLSSYFTDSGSPLAVF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4589460 4592693 - Conep07aG0077800.1 Cone7ag0750 441346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0750 353 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cone7ag0750 353 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 Gene3D Transferase(Phosphotransferase) domain 1 149 348 - -
Cone7ag0750 353 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 SUPERFAMILY Protein kinase-like (PK-like) 62 334 IPR011009 -
Cone7ag0750 353 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Cone7ag0750 353 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 40 345 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone7ag0750 353 PRINTS Tyrosine kinase catalytic domain signature 181 199 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 PRINTS Tyrosine kinase catalytic domain signature 144 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 PRINTS Tyrosine kinase catalytic domain signature 247 269 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Cone7ag0750 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0750 353 CDD PKc_MAPKK_plant_like 67 333 - -
Cone7ag0750 353 Gene3D Phosphorylase Kinase; domain 1 47 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0750 K20603 - - cit:102625262 545.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0750 Cone-Chr7:4589460 Cone7ag1164 Cone-Chr7:8676600 2.75E-145 dispersed
Cone4ag0048 Cone-Chr4:242138 Cone7ag0750 Cone-Chr7:4589460 1.23E-190 wgd
Cone7ag0046 Cone-Chr7:199505 Cone7ag0750 Cone-Chr7:4589460 4.29E-191 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0048 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.7 2.9e-131 465.7
Cone7ag0046 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.4 6.5e-131 464.5
Cone7ag0750 . 20 351 MAP Kinase Kinase Gene Family AT4G26070 62.2 2.1e-121 433.0
Cone7ag1164 . 29 355 MAP Kinase Kinase Gene Family AT4G26070 56.1 3.1e-109 392.5
Cone4ag0048 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.1e-135 480.3
Cone7ag0046 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 6.9e-133 471.1
Cone7ag0750 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 1.8e-120 429.9
Cone7ag1164 . 10 328 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.8e-109 393.3
Cone3ag0716 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.3e-223 773.1
Cone10ag0698 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.2e-221 766.5
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT1G51660 74.5 8.4e-145 510.8
Cone17ag0025 . 76 362 MAP Kinase Kinase Gene Family AT1G51660 81.2 6.1e-135 478.0
Cone7ag0824 . 22 329 MAP Kinase Kinase Gene Family AT1G51660 73.6 9.4e-128 454.1
Cone4ag0888 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 66.8 1.3e-121 433.7
Cone2ag0738 . 49 312 MAP Kinase Kinase Gene Family AT1G51660 53.4 2.0e-77 287.0
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT3G21220 71.3 1.9e-138 489.6
Cone17ag0025 . 76 364 MAP Kinase Kinase Gene Family AT3G21220 79.2 3.4e-135 478.8
Cone7ag0824 . 1 329 MAP Kinase Kinase Gene Family AT3G21220 69.0 2.4e-125 446.0
Cone4ag0888 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.6 6.0e-124 441.4
Cone2ag0738 . 43 314 MAP Kinase Kinase Gene Family AT3G21220 53.7 1.2e-79 294.3
Cone7ag1164 . 1 358 MAP Kinase Kinase Gene Family AT5G56580 83.6 4.3e-170 594.7
Cone4ag0048 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 4.7e-116 415.2
Cone7ag0046 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 2.3e-115 412.9
Cone7ag0750 . 11 340 MAP Kinase Kinase Gene Family AT5G56580 58.4 2.3e-110 396.4
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G18350 62.5 1.0e-106 384.0
Cone17ag0025 . 65 335 MAP Kinase Kinase Gene Family AT1G18350 50.5 1.7e-77 287.0
Cone4ag0888 . 62 330 MAP Kinase Kinase Gene Family AT1G18350 50.7 3.2e-73 272.7
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.4 1.4e-111 400.2
Cone17ag0025 . 79 335 MAP Kinase Kinase Gene Family AT1G73500 51.7 4.4e-78 288.9
Cone4ag0888 . 74 330 MAP Kinase Kinase Gene Family AT1G73500 51.7 1.3e-74 277.3
Cone12ag0478 . 59 335 MAP Kinase Kinase Gene Family AT1G73500 50.9 1.3e-74 277.3
Cone12ag0478 . 1 333 MAP Kinase Kinase Gene Family AT1G32320 53.3 4.8e-85 312.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83024 PF02297 COX6B 3.60E-18 CL0351 Cone PK