Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0758 ATGGATGGAGGAGCAGCGTACAACCCTCGCACGGTGGAGGAGGTTTTCAGGGACTTCAAGGGACGTCGAGCCGGCATCATTAAAGCTCTCACTACTGATGTTGAGGAGTTTTTCCAGCGGTGTGATCCTGAGAAAGAGAATCTTTGCCTATATGGATTTCCTAATGAACAGTGGGATGTTAATTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCAGAGCCCGCATTAGGCATTAACTTTGCCCGAGATGGGATGCAAGAGAAGGATTGGCTATCACTGGTTGCTGTTCATAGTGACGCATGGTTGCTTGCTGTGGCATTTTACTTTGGTGCAAGATTTGGTTTTGATAAAGCTGATAGAAAACGTCTCTTCTCTATTATAAATGATCTACCTACAATATTCAAGGTTGTGACTGGAAGTGTGAAGAAACAAGGAAAGGAAAAGTCAACGGTTACAAATCACAGTAGCACAAAAACTAAATCCGGCTCAAAAGGGCGTGGATCTGAGTCGGCAAAGCCAAAAGGAACTCCCAAGGATGAGGAAGAGGTAATGGATGAAGAAGATGAAGAGGAGCATGGAGAGACATTGTGTGGGGCCTGTGGGGAGAACTATGCATCAGATGAGTTCTGGATTTGTTGCGACATTTGCGAGAAATGGTTCCATGGCAAGTGCGTGAAGATCACTCCTGCAAGGGCTGAGCATATAAAGCAATACAAGTGCCCCGCATGCACCAACAAGCGAGCTCGGCCCTAG 753 46.48 MDGGAAYNPRTVEEVFRDFKGRRAGIIKALTTDVEEFFQRCDPEKENLCLYGFPNEQWDVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFSIINDLPTIFKVVTGSVKKQGKEKSTVTNHSSTKTKSGSKGRGSESAKPKGTPKDEEEVMDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACTNKRARP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4685575 4688878 - Conep07aG0078600.1 Cone7ag0758 441354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0758 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Cone7ag0758 250 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone7ag0758 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Cone7ag0758 250 MobiDBLite consensus disorder prediction 145 164 - -
Cone7ag0758 250 CDD PHD_AL_plant 196 246 IPR044104 -
Cone7ag0758 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
Cone7ag0758 250 MobiDBLite consensus disorder prediction 145 188 - -
Cone7ag0758 250 SMART PHD_3 196 244 IPR001965 -
Cone7ag0758 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Cone7ag0758 250 Pfam PHD-finger 197 243 IPR019787 -
Cone7ag0758 250 MobiDBLite consensus disorder prediction 165 180 - -
Cone7ag0758 250 PANTHER CPG BINDING PROTEIN 7 249 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone7ag0758 250 FunFam PHD finger alfin-like protein 189 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0758 K26274 - - rcu:8272513 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0428 Cone-Chr3:2086673 Cone7ag0758 Cone-Chr7:4685575 2.05E-111 dispersed
Cone7ag0758 Cone-Chr7:4685575 Cone7ag1605 Cone-Chr7:10940102 1.17E-151 dispersed
Cone4ag0807 Cone-Chr4:5105854 Cone7ag0758 Cone-Chr7:4685575 2.73E-181 wgd
Cone4ag1687 Cone-Chr4:12572850 Cone7ag0758 Cone-Chr7:4685575 3.34E-145 wgd
Cone4ag0041 Cone-Chr4:221832 Cone7ag0758 Cone-Chr7:4685575 2.48E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g114 . . . Bda11g01029 Bpe01g00604 . . Bma11g00599 . . . . . . . . . . . . . . . . Cla11g00146 Cam11g0168 Cec11g0170 Cco11g0181 Clacu11g0303 Cmu11g0156 Cre11g0655 . . . Cone7ag0758 . . . . . . Bda02g00379 . . . Bma01g00252 . . . . . . . . . . Bhi06g01609 . . . . . . Cla03g01469 Cam03g1545 Cec03g1587 Cco03g1580 Clacu03g1569 Cmu03g2125 Cre03g1798 Lsi11g00171 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0883 . 1 250 Alfin-like Transcription Factor Family AT1G14510 85.2 6.9e-114 407.5
Cone13ag0701 . 1 253 Alfin-like Transcription Factor Family AT1G14510 82.2 4.5e-113 404.8
Cone10ag0852 . 1 250 Alfin-like Transcription Factor Family AT1G14510 84.4 5.0e-112 401.4
Cone19ag0696 . 1 252 Alfin-like Transcription Factor Family AT1G14510 80.6 1.4e-109 393.3
Cone7ag1605 . 1 251 Alfin-like Transcription Factor Family AT1G14510 72.9 1.5e-95 346.7
Cone7ag0758 . 9 247 Alfin-like Transcription Factor Family AT1G14510 68.4 8.8e-93 337.4
Cone4ag1687 . 1 254 Alfin-like Transcription Factor Family AT1G14510 72.8 4.4e-92 335.1
Cone4ag0807 . 9 247 Alfin-like Transcription Factor Family AT1G14510 65.7 4.1e-90 328.6
Cone3ag0428 . 7 236 Alfin-like Transcription Factor Family AT1G14510 60.0 3.6e-78 288.9
Cone10ag0390 . 7 216 Alfin-like Transcription Factor Family AT1G14510 53.8 2.3e-64 243.0
Cone9ag1035 . 1 124 Alfin-like Transcription Factor Family AT1G14510 71.8 1.5e-36 150.6
Cone7ag1605 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.9 7.3e-111 397.5
Cone7ag0758 . 1 249 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-108 387.5
Cone4ag1687 . 1 255 Alfin-like Transcription Factor Family AT5G26210 79.6 1.3e-107 386.7
Cone4ag0807 . 1 249 Alfin-like Transcription Factor Family AT5G26210 71.7 9.2e-106 380.6
Cone19ag0696 . 1 252 Alfin-like Transcription Factor Family AT5G26210 70.2 2.0e-92 336.3
Cone13ag0701 . 1 253 Alfin-like Transcription Factor Family AT5G26210 71.1 6.4e-91 331.3
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT5G26210 71.1 1.9e-90 329.7
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT5G26210 70.7 1.3e-88 323.6
Cone3ag0428 . 4 238 Alfin-like Transcription Factor Family AT5G26210 59.4 1.2e-81 300.4
Cone10ag0390 . 4 218 Alfin-like Transcription Factor Family AT5G26210 53.0 1.1e-66 250.8
Cone7ag1605 . 3 253 Alfin-like Transcription Factor Family AT3G42790 75.8 6.7e-101 364.4
Cone7ag0758 . 1 249 Alfin-like Transcription Factor Family AT3G42790 68.9 2.8e-99 359.0
Cone4ag0807 . 1 249 Alfin-like Transcription Factor Family AT3G42790 68.1 5.9e-97 351.3
Cone4ag1687 . 1 255 Alfin-like Transcription Factor Family AT3G42790 73.5 8.5e-96 347.4
Cone13ag0701 . 9 253 Alfin-like Transcription Factor Family AT3G42790 71.0 5.3e-90 328.2
Cone19ag0696 . 9 252 Alfin-like Transcription Factor Family AT3G42790 70.4 9.1e-90 327.4
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT3G42790 71.8 1.2e-89 327.0
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT3G42790 72.2 3.4e-89 325.5
Cone3ag0428 . 6 238 Alfin-like Transcription Factor Family AT3G42790 59.8 4.5e-81 298.5
Cone10ag0390 . 6 218 Alfin-like Transcription Factor Family AT3G42790 53.5 5.7e-68 255.0
Cone3ag0428 . 6 239 Alfin-like Transcription Factor Family AT5G05610 78.7 5.8e-110 394.4
Cone10ag0390 . 4 219 Alfin-like Transcription Factor Family AT5G05610 71.7 8.2e-96 347.4
Cone7ag0758 . 8 249 Alfin-like Transcription Factor Family AT5G05610 64.2 8.7e-90 327.4
Cone4ag0807 . 8 249 Alfin-like Transcription Factor Family AT5G05610 65.0 3.3e-89 325.5
Cone7ag1605 . 8 253 Alfin-like Transcription Factor Family AT5G05610 64.0 1.3e-88 323.6
Cone4ag1687 . 8 256 Alfin-like Transcription Factor Family AT5G05610 61.6 7.7e-86 314.3
Cone13ag0701 . 9 249 Alfin-like Transcription Factor Family AT5G05610 63.9 3.6e-83 305.4
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT5G05610 62.3 6.1e-83 304.7
Cone19ag0696 . 9 251 Alfin-like Transcription Factor Family AT5G05610 63.8 6.1e-83 304.7
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT5G05610 61.5 8.8e-82 300.8
Cone3ag0428 . 43 239 Alfin-like Transcription Factor Family AT3G11200 80.6 2.0e-91 332.8
Cone10ag0390 . 33 219 Alfin-like Transcription Factor Family AT3G11200 75.9 2.3e-79 292.7
Cone4ag0807 . 44 249 Alfin-like Transcription Factor Family AT3G11200 64.3 2.2e-74 276.2
Cone7ag0758 . 44 249 Alfin-like Transcription Factor Family AT3G11200 63.8 2.2e-74 276.2
Cone7ag1605 . 44 253 Alfin-like Transcription Factor Family AT3G11200 66.0 6.5e-74 274.6
Cone4ag1687 . 44 256 Alfin-like Transcription Factor Family AT3G11200 62.8 1.1e-70 263.8
Cone3ag0883 . 44 252 Alfin-like Transcription Factor Family AT3G11200 62.7 3.1e-68 255.8
Cone13ag0701 . 44 249 Alfin-like Transcription Factor Family AT3G11200 63.8 2.0e-67 253.1
Cone19ag0696 . 44 251 Alfin-like Transcription Factor Family AT3G11200 62.7 3.5e-67 252.3
Cone10ag0852 . 44 252 Alfin-like Transcription Factor Family AT3G11200 61.2 1.3e-66 250.4
Cone3ag0883 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 3.8e-75 278.9
Cone13ag0701 . 1 161 Alfin-like Transcription Factor Family AT2G02470 84.5 1.1e-74 277.3
Cone10ag0852 . 1 161 Alfin-like Transcription Factor Family AT2G02470 84.5 1.9e-74 276.6
Cone19ag0696 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.2 2.4e-74 276.2
Cone7ag1605 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.3 3.9e-64 242.3
Cone7ag0758 . 1 158 Alfin-like Transcription Factor Family AT2G02470 73.4 7.4e-63 238.0
Cone4ag1687 . 9 158 Alfin-like Transcription Factor Family AT2G02470 77.3 2.8e-62 236.1
Cone4ag0807 . 1 158 Alfin-like Transcription Factor Family AT2G02470 72.2 8.2e-62 234.6
Cone3ag0428 . 7 154 Alfin-like Transcription Factor Family AT2G02470 68.2 1.8e-53 206.8
Cone10ag0390 . 7 134 Alfin-like Transcription Factor Family AT2G02470 58.3 5.1e-40 162.2
Cone7ag1605 . 3 167 Alfin-like Transcription Factor Family AT5G20510 78.2 6.9e-74 274.2
Cone4ag0807 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.6 6.5e-72 267.7
Cone7ag0758 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 8.5e-72 267.3
Cone4ag1687 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 1.9e-71 266.2
Cone3ag0883 . 3 163 Alfin-like Transcription Factor Family AT5G20510 73.0 2.2e-64 242.7
Cone10ag0852 . 3 163 Alfin-like Transcription Factor Family AT5G20510 72.4 1.1e-63 240.4
Cone13ag0701 . 6 163 Alfin-like Transcription Factor Family AT5G20510 72.5 9.4e-63 237.3
Cone19ag0696 . 6 163 Alfin-like Transcription Factor Family AT5G20510 70.6 1.0e-61 233.8
Cone3ag0428 . 6 144 Alfin-like Transcription Factor Family AT5G20510 68.5 5.2e-53 204.9
Cone10ag0390 . 6 124 Alfin-like Transcription Factor Family AT5G20510 58.7 5.0e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46498 None None None None Cone TF