Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0776 ATGAAAGCACCTACAAATGGTTTTCTCACTAATGCTGGAGAAGAAGAAAGAAAGAGTATCAATTCAGAGCTATGGCATGCCTGTGCCGGCCCTCTGGTTTCTTTACCTCCAGTTGGAAGTCTTGTAGTATACTTCCCTCAAGGCCACAGTGAACAAGTTTCAGCATCTATGCAAAAGAAGACCGATTTCATACCCAACTACCCGAATCTCCTTTCCAAGTTGATTTGCATGCTTCATAATCTCACATTACATGCTGATCCTGAAACGGACGAGGTCTATGCACAGATGACACTTCAACCTGTAACCAAATATGAGAAGGATACCTTGCTTGTGACTGACTTGGGGCTCAAGCAAGGCAGGCAACCTGCTGAGTTCTTCTGTAAAACTCTCACAGCCAGTGATACAAGCACTCATGGTGGATTTTCTGTTCCAAGACGTGCTGCTGAGAAGATCCTCCCACCATTAGATTTTTCTATGCAACCTCCTTCTCAGGAACTAGTTGCTAGAGATTTACATGACAATTCATGGACATTTAGACATATTTATCGCGGCCAGCCTAAAAGGCATCTGCTTACAACTGGTTGGAGTGTCTTTGTAAGCACCAAACGTCTCTTTGCAGGAGACTCTGTTCTCTTTATAAGGGATGAAAAATCACAGCTTCTATTAGGTACAAGAAGTGCTAACAGACAGCAGCCTGCTTTGTCATCATCAGTCATTTCAAGTGATAGCATGCACATTGGAATTCTAGCTGCTGCTGCTCATGCGGCTGCTAATAATAGCCCCTTTACTATATTTTACAACCCAAGGACCAGCCCTTCTGAGTTTGTGATTTCATTGGCAAAGTACAACAAAGCAATGTATACCCAGATTTCGCTTGGAATGCGATTTAGAATGCTGTTTGAAACAGAGGATTCAGGGGTGAGAAGGTACATGGGTACTGTAACTGGTATTAGTGATTTGGATCCTGTTCGGTGGAAAAATTCACAGTGGAGAAATCTTCAGGTGGGATGGGACGAATCAGCAGCTGGTGAAAGGCCAAGCCGAGTATCAATATGGGAAATCGATCCTGTAATAACTCCGTTTTATATATGTCCACCTTCTTTTTTCAGACCAAAGTTCCCGAAACAACCTGGGATGCCAGATGATGAGTCCGATATGGAGAATGCTTTCAAACAAGCCATGCCCTGGCTTGGAGATGACTTTGGGTTGAAGGATACCCTTCCAGGCTTAAGTCTAGTCCAGTGGATGAGCATGCAGCAACAGAATAATCAGCAGTTTCCTTCCAATCAGTCCGGGTTTTTCCCGTCCATAGTCTCTACTTTGAATAACTTCAGCTCGGACGATCCGTCCAAGCTACTGAGTTTCCGGGGCCCGCCAAATCTCCATTATAACAACAAACCAAATCAAGTTAACCAAGTCAACCAACTACAACCGCCTCAATTATTACAGAACCCCATAAACCAACAAACTCAGAAATTGACAGAACGGCAGTTAACTCAACCGGCTCAGTTAAATAACGCTGTTGTTTCATCAGTCAACCAACCAGTTATGTGCTCTCAGCTTCAGCAACAACAACAGCCGCAAGATTCTTCACACTTTCAGCAACAGATTGAGCAGCAGCCTATCTCCTTTCCAACGCAGCAGCAGATGCAAGCACAGTTATTGCAACAGAGCCTTTCTCAAAGAATGCAGAGAGCACCACATCAGATGCTCTCTGAGCAACAAATTCAGTTGCAACTGTTACAAAAATTGCAGCATCAGCAGCAATTACTCTCCCAACAACAACATCAGCAGCAGCCGCAACAATTACTCTCCCGAGCAGGTCCAAACTTTCCACCTCTGCTGCCACATCAACAGCCAGTCCAGGACCTTCAGCAAAACCAGCAATTATCACAGTTAGGCCAGCAACAACATATGAATTCAGATAGCTTTCCAGCAGAGAAGCGTGTCAACAACACAAACATCTGCCCGGCTGCTGGCCCTATACAAACTTACCAGATTCATCCTGTGGCCCAACAACAACCTCTACCCCAAGCCCAACTCCAGGCCCGGTTCAAACCACTAAATGCAATACGAGGCCATTCCGTTCTAACAGATGGAGATGCTCCATCATGTTCAACCTCCCCTTCCGCGAACAATTGCCTGGTCTCAGCACCAAATTTTACAAACAGAAACCAACAAGGTTCCATGAGTCTAGCTGGTGATTCATTGATCGAACCATCAAGCAATATGCTTCAAGAGCTTCTACGAAAGTCAGAAAACGGAGTCAAACACGACCTGGTCAGCCAAAAGGGACAAGACCAACTAAAATACAAAGGACCCATCACAGACCCATTGGAAGCATCCTCTTCTGGAACATCATATTGTCTAGACGCAAGCACGATCCATCAGACTTTCCATCTCCCTACTTTCTGTTTGGATACAAGTGATGTTCAATCCCATCCTCAGAATAATCTTCCATTTGCAGCAGCTAATCTTAATGGGTTCAATAATCCAGATAACACTTTATTGTCAAGAGGGTATGACTCTCAGAAAGATCTTCACAACTTACTTTCCAACTATGGAGGCACAGCAAGAGACATAGAGACAGAGCTTTCCGCTGCTGATATCAGTCGTCAGTCTCTAGTTCCCCAAAACATGTCTTTCATGCCCAGTTGCTCAAATGACGTTACCATAAATGAAACTGCAGTTTTGAATGGTGGCATGTGGACAAGCCAGTCTCAAAAAATGCGAACATATACGAAGGTTCAAAAGCGGGGATCTGTAGGGAGATGTATTGACGTTACAAGTTACAAAGGGTACGATGAACTCAGGAACGATCTGGCGCGCATGTTTGGTATTGAAGGGCAGCTAGAAGATCCACTAAGGACTGAGTGGAAGCTTGTTTATGTAGATCATGAAAATGACATACTTCTTGTAGGAGATGATCCATGGGAAGAATTTGTAAGCTGTGTTCAAAGCATAAAGATACTTTCATTAGCCGAAGTGCAAAGAATGAGCCTGGATGGAGATTTGGGTTATATTCAACAAGTGTCAAACCAAGCTTGTAGTGGGACAGAAAGTGGAAATGCTTGGAGAGGACAATTTGATGATAATTCTGCCGCCTCTTTTGATCGATGA 3120 44.1 MKAPTNGFLTNAGEEERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVSASMQKKTDFIPNYPNLLSKLICMLHNLTLHADPETDEVYAQMTLQPVTKYEKDTLLVTDLGLKQGRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKILPPLDFSMQPPSQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGTRSANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRTSPSEFVISLAKYNKAMYTQISLGMRFRMLFETEDSGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESAAGERPSRVSIWEIDPVITPFYICPPSFFRPKFPKQPGMPDDESDMENAFKQAMPWLGDDFGLKDTLPGLSLVQWMSMQQQNNQQFPSNQSGFFPSIVSTLNNFSSDDPSKLLSFRGPPNLHYNNKPNQVNQVNQLQPPQLLQNPINQQTQKLTERQLTQPAQLNNAVVSSVNQPVMCSQLQQQQQPQDSSHFQQQIEQQPISFPTQQQMQAQLLQQSLSQRMQRAPHQMLSEQQIQLQLLQKLQHQQQLLSQQQHQQQPQQLLSRAGPNFPPLLPHQQPVQDLQQNQQLSQLGQQQHMNSDSFPAEKRVNNTNICPAAGPIQTYQIHPVAQQQPLPQAQLQARFKPLNAIRGHSVLTDGDAPSCSTSPSANNCLVSAPNFTNRNQQGSMSLAGDSLIEPSSNMLQELLRKSENGVKHDLVSQKGQDQLKYKGPITDPLEASSSGTSYCLDASTIHQTFHLPTFCLDTSDVQSHPQNNLPFAAANLNGFNNPDNTLLSRGYDSQKDLHNLLSNYGGTARDIETELSAADISRQSLVPQNMSFMPSCSNDVTINETAVLNGGMWTSQSQKMRTYTKVQKRGSVGRCIDVTSYKGYDELRNDLARMFGIEGQLEDPLRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSLAEVQRMSLDGDLGYIQQVSNQACSGTESGNAWRGQFDDNSAASFDR 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4949876 4955512 + Conep07aG0080400.1 Cone7ag0776 441372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0776 1039 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone7ag0776 1039 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Cone7ag0776 1039 Gene3D - 289 359 - -
Cone7ag0776 1039 Pfam AUX/IAA family 906 996 IPR033389 -
Cone7ag0776 1039 MobiDBLite consensus disorder prediction 591 618 - -
Cone7ag0776 1039 Gene3D - 124 227 IPR015300 -
Cone7ag0776 1039 CDD B3_DNA 125 218 IPR003340 GO:0003677(InterPro)
Cone7ag0776 1039 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cone7ag0776 1039 FunFam Auxin response factor 289 361 - -
Cone7ag0776 1039 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677(InterPro)
Cone7ag0776 1039 SUPERFAMILY CAD & PB1 domains 913 990 - -
Cone7ag0776 1039 ProSiteProfiles PB1 domain profile. 911 998 IPR053793 -
Cone7ag0776 1039 FunFam Auxin response factor 906 1000 - -
Cone7ag0776 1039 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1002 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone7ag0776 1039 MobiDBLite consensus disorder prediction 448 470 - -
Cone7ag0776 1039 Gene3D - 906 1000 - -
Cone7ag0776 1039 MobiDBLite consensus disorder prediction 591 606 - -
Cone7ag0776 1039 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
Cone7ag0776 1039 FunFam Auxin response factor 124 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0007 Cone-Chr7:41810 Cone7ag0776 Cone-Chr7:4949876 0 dispersed
Cone7ag0776 Cone-Chr7:4949876 Cone7ag1874 Cone-Chr7:12073372 2.36E-191 dispersed
Cone7ag0776 Cone-Chr7:4949876 Cone4ag0837 Cone-Chr4:5421395 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46501 PF00149 Metallophos 1.60E-20 CL0163 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0776 K14486 - gmx:100815277 1229.16