Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0777 ATGGCGACTACTCAGCTCACAGCTTCCAATATCTCTGTGAGGACCGTGTCTTCATTTGAAGGCCTTCGACCTTGTGCGGTGAATTTTTCTCCCGCATCTGGGCATGTCAGAATTGGCGTTCTGACTCAGAGGTTTCGAGGGCTAGCTGTCAAAGCTGCCACCGTCGTTGCTCCTAAGTACACTTCAATCAAGCCTTTGGGAGACAGAGTTCTGGTGAAAATTAAAACCGCAGAGGAAAAGACTGAAGGCGGTATCTTACTTCCAACCACAGCTCAATCTAAACCACAAGGAGGAGAGGTTGTTGCTGTTGGAGAAGGCAAGTCAATTGGAAAGACCAAAGTGGATGTTAGTGTAAAGACTGGAATCCAAGTTGTGTACTCCAAATATGCCGGCACGGAGTTGGAGTTTAATGGTTCGAAGCATCTTATTCTTAAAGACGATGATATTGTGGGTGTTCTGGAAACTGATGATGTGAAGGATCTTAAACCTCTTAATGACAGAGTGTTGATTAAGGTTGCAGAGGCAGAGGAGAAGACAGCAGGAGGATTGTTGCTGACAGAGGCAACCAAGGAGAAACCTTCCTTTGGAACAATTATAGCAGTGGGGCCGGGTCCTCTTGATGAAGAAGGGAACAGAAAACCATTATCAGTTTCCCAAGGGAACACTGTAATGTACTCAAGGTATGCAGGAAACGAGTTCAAGGGCAAAGATGGTTCTGACTACATTGCCTTGAAGGTGTCCGATGTTATCGCTGTGCTCTCTTAG 765 46.01 MATTQLTASNISVRTVSSFEGLRPCAVNFSPASGHVRIGVLTQRFRGLAVKAATVVAPKYTSIKPLGDRVLVKIKTAEEKTEGGILLPTTAQSKPQGGEVVAVGEGKSIGKTKVDVSVKTGIQVVYSKYAGTELEFNGSKHLILKDDDIVGVLETDDVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSFGTIIAVGPGPLDEEGNRKPLSVSQGNTVMYSRYAGNEFKGKDGSDYIALKVSDVIAVLS 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4955399 4957359 - Conep07aG0080500.1 Cone7ag0777 441373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0777 254 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Cone7ag0777 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cone7ag0777 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 55 251 IPR020818 GO:0005524(InterPro)|GO:0005759(PANTHER)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0009536(PANTHER)|GO:0044183(InterPro)|GO:0046872(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cone7ag0777 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Cone7ag0777 254 CDD cpn10 62 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457(InterPro)
Cone7ag0777 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457(InterPro)
Cone7ag0777 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 CDD cpn10 161 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457(InterPro)|GO:0046914(InterPro)|GO:1901671(InterPro)
Cone7ag0777 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
Cone7ag0777 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cone7ag0777 254 FunFam 10 kDa chaperonin 158 254 - -
Cone7ag0777 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cone7ag0777 254 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0836 Cone-Chr4:5419523 Cone7ag0777 Cone-Chr7:4955399 2.42E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0777 K04078 - gmx:100814751 398.282