Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0780 ATGGCTTCCCCCCAACTGAAGTTAGCGTTTGTGTTCCTCTTAGCGGCGGTCTTCCTCTCAAGAACGCTGGCTCAGAACTTAACAAACCCTTCCTCCAAAATTTACCATTTCTCTGCCGTTAGATCATTCTGCCAGAACAACACTCCGTACCCAGATCTCTGCTTTGATTCATTAAAGCTCTCTGTATCAATCGGCATCAATCCCGACATCACAGCTTATCTCCTCCAATCCCTCCGCATAGCAATATCCCAAGCTGGGAAACTCTCCGCCGTGTTGCTCAACAATGCTGCCGGAAACTCCGGTGGCGTCTTGGAGAAACAACGAGGAACCATGCAAGACTGCCAGGAGCTTCACCGCATCACCTTTTCCTCTCTAGAAAGATCACTCTTGAAAATCCAATCGGCAAAGCCAGACGATGCAAGAGCTTATCTTAGTGCATCTCTGACCAACAAGAACACCTGCTTAGAGGGCCTGGATTCTGCGTCCGGCCCGCTCAAGCCCGTAATAACGACTCTGCTGACTTCTTCCTACAAGTACGTAAGCAATTCCCTTTCGATACTTGCAAGGTCGAAAGCGAACAAAAAACTGAAAGGCCAGACGAAAGGGCGTCGTTTGATGGGTATTAATAATAATAAGTTGTTCACAAGTTGGCTTTCGCGGAAGGATCGTAGAATCTTGCAGAGCTCGGAGTATTCAGAGGGGGAAGTGATAACAGTTGCTTCCGATGGGACAGGGAACTTTACTACCATTACTGATGCTGTCCAGTTTGCTCCAAACAATAGTAATGACAGGACAATTATTTATGTCACTCAAGGGGTGTATGAAGAAAATGTGGAGATTCCAAGTTATAAGACCAACATTGTTTTTATTGGTGATGGAACTGATGCCACAGTCATTACTGGTAACAGAAGCGTCGGTGATTCTTGGACAACTTTCAGATCTGCAACCCTCGCGGTGTCTGGCGATGGATTCTTGGCAAGGGATATCACAATAGAAAACAGGGCAGGACCAGAAAAGCACCAAGCAGTGGCCTTAAGAGTAAACGCCGATTTGGTAGCCTTTTACCGTTGTGCCATGGATGGTTATCAGGACACTCTCTACGCTCACTCGTTCCGACAATTTTACAGGGAGTGCAATATAAGTGGGACAGTAGATTTCATATTTGGCAATGCAGCAGTGGTCTTCCAAGCATGCAACATAATTCCCAAAATGCCCCTTCCTGGCCAATTCATTGCCATCACAGCCCAATCTCGGGACAGTCCTGATGAGGACACTGGCATTTCTGTCCAAAACTGTTCAGTTGTAGCTAACGATCAGGAGGTATATTCTTCCAACTCAGCAGGTACTCTACGTACCTATCTAGGGAGGCCGTGGAGGTTTTATTCTCGGACGGTTTTTCTTGGCACGTATCTTGGTGAGTTCGTTGATCCAACAGGGTGGATCGGGTGGTCCGGCGATCAAGGCTTGGACACTTTGTATTATGGTGAGTATGGAAATTATGGTCCTGGTTCAGGGACGGATAATAGAGTTCCTTGGTTAGGGTATCATAGAATGGATTACGATGATGCATTCAATTTTACAGTGCACGAGTTTATTAGCGGTGATGCTTGGCTTTATTCTACTTCATTTCCTTATGACGATGGAATTTGA 1650 46.18 MASPQLKLAFVFLLAAVFLSRTLAQNLTNPSSKIYHFSAVRSFCQNNTPYPDLCFDSLKLSVSIGINPDITAYLLQSLRIAISQAGKLSAVLLNNAAGNSGGVLEKQRGTMQDCQELHRITFSSLERSLLKIQSAKPDDARAYLSASLTNKNTCLEGLDSASGPLKPVITTLLTSSYKYVSNSLSILARSKANKKLKGQTKGRRLMGINNNKLFTSWLSRKDRRILQSSEYSEGEVITVASDGTGNFTTITDAVQFAPNNSNDRTIIYVTQGVYEENVEIPSYKTNIVFIGDGTDATVITGNRSVGDSWTTFRSATLAVSGDGFLARDITIENRAGPEKHQAVALRVNADLVAFYRCAMDGYQDTLYAHSFRQFYRECNISGTVDFIFGNAAVVFQACNIIPKMPLPGQFIAITAQSRDSPDEDTGISVQNCSVVANDQEVYSSNSAGTLRTYLGRPWRFYSRTVFLGTYLGEFVDPTGWIGWSGDQGLDTLYYGEYGNYGPGSGTDNRVPWLGYHRMDYDDAFNFTVHEFISGDAWLYSTSFPYDDGI 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4988409 4991183 - Conep07aG0080800.1 Cone7ag0780 441376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0780 549 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Cone7ag0780 549 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 187 IPR035513 -
Cone7ag0780 549 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857(InterPro)
Cone7ag0780 549 Gene3D - 233 549 IPR012334 -
Cone7ag0780 549 CDD PMEI-like_3 42 189 - -
Cone7ag0780 549 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 189 IPR035513 -
Cone7ag0780 549 SUPERFAMILY Pectin lyase-like 235 546 IPR011050 -
Cone7ag0780 549 Pfam Pectinesterase 237 535 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone7ag0780 549 FunFam Pectinesterase 231 549 - -
Cone7ag0780 549 SMART PMEI_2 35 186 IPR006501 GO:0004857(InterPro)
Cone7ag0780 549 PANTHER PECTINESTERASE 10 539 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone7ag0780 549 NCBIfam pectinesterase inhibitor domain 12 187 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0780 Cone-Chr7:4988409 Cone8ag0082 Cone-Chr8:430323 3.27E-117 dispersed
Cone7ag0775 Cone-Chr7:4905105 Cone7ag0780 Cone-Chr7:4988409 3.87E-09 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0780 - - - 0.0