Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0811 | ATGTCAGAAATTGAACCCATCCTTCAGTCTGAAATCTTGCAAAGCTATTTAGAATCTCCATCGTCCTCTGAGATTACAGCTGTAGGAGAAGACGGTGCTGTTCCTGATGAAGATGTAGAACATCTTCTTTATGTAGATGAAACTAGTCATCTAGTGAATACAGACCAACCACAATGCCGTATATGCCTCGACTCTGGAGGGGATGATGTTATTGCTCCTTGCTACTGCAGAGGCACACAAAAGTATGTCCACAGATCATGTCTTGACAATTGGAGGTCCACGAAGGAGGGCTTTGCTTTTGCACACTGTACAGAGTGCAGAGCGTCATTCATATTGAAAGCAAATGTTCCTCCTGATCGATGGTGGTTGAGATTGAAATTCCAGTTGCTTGTTGCGAGGGACCATGCATTCATTTTTATAATTGTTCAGCTGATTGTTGCATTCTTGGGGGTGTTAGTGTACAAGTTTTATGGAGAGGAACTTAGAGAAATGTTTGGTTATGAAGAACACCCATATGGTTTCTATGCCGTGGCAGTTTTAGCAATCATCTTGGTTGGTTTGCTTTATGGTTTCTTCATAGCTATTATCTGTGGGCAGAAGATCCATGAACGGCATTACCATGTTCTTGCCAAACAGGAGCTAACAAAGGAATATGTAGTGGAAGATCGAGAATGTAATAAGAACCCCCCTGAGCTTGACCCCAATCATATCACCGAGCTAAGGATGTTGGGCCTGTACTGA | 741 | 42.65 | MSEIEPILQSEILQSYLESPSSSEITAVGEDGAVPDEDVEHLLYVDETSHLVNTDQPQCRICLDSGGDDVIAPCYCRGTQKYVHRSCLDNWRSTKEGFAFAHCTECRASFILKANVPPDRWWLRLKFQLLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAVAVLAIILVGLLYGFFIAIICGQKIHERHYHVLAKQELTKEYVVEDRECNKNPPELDPNHITELRMLGLY | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6023430 | 6027463 | - | Conep07aG0084000.1 | Cone7ag0811 | 441407 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0811 | 246 | SUPERFAMILY | RING/U-box | 53 | 110 | - | - | |
| Cone7ag0811 | 246 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 51 | 113 | IPR011016 | GO:0008270(InterPro) | |
| Cone7ag0811 | 246 | Pfam | RING-variant domain | 59 | 106 | IPR011016 | GO:0008270(InterPro) | |
| Cone7ag0811 | 246 | CDD | RING_CH-C4HC3_MARCH | 59 | 107 | - | - | |
| Cone7ag0811 | 246 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 177 | 246 | - | - | |
| Cone7ag0811 | 246 | SMART | ringv_2 | 58 | 107 | IPR011016 | GO:0008270(InterPro) | |
| Cone7ag0811 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 119 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0811 | Cone-Chr7:6023430 | Cone9ag1513 | Cone-Chr9:11069236 | 9.89E-12 | dispersed | |
| Cone4ag0879 | Cone-Chr4:6222422 | Cone7ag0811 | Cone-Chr7:6023430 | 1.90E-162 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0811 | - | - | - | 0.0 |