Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0827 ATGATGAAGAATTGGAACTGGAAAGGGATATTTGTGCTCATTAATCTCTGCATTTTGGGATGGAAGCCAAGCTCTGTCAATGGAGACACAGATCCAACAGATGCTTCTGCTCTAAAGACTTTGTACTCTAGTTTAAACTCACCAACTCAGCTTACCCAATGGAGTTCAACTGGTGACGATCCATGTGGGCAGTCTTGGAAAGGAGTCACTTGTGCAGGCTCACGGGTCACCGAAATTGTGATATCTGGTTTAGGACTTTCTGGGTCGCTGGGATACCAGCTCACAAGTTTGACATCTTTAACCAACCTAGATGTGAGCAACAACAATCTTGGAGGCGGGATAACTTATCAACTACCACCAAACTTGCTGCAATTAAATCTTGCCCGTAATAACTTGAATGGAGGCATCCCCTATTCTATCTCTCAGATGACTTCTCTTAAGTACTTGGATCTCTCTTATAACTCTTTGCCGGGTAACCTCCCAAGCACTTTTAGCTCCCTTTCTAGCATGAATACAATGTACTTGGAAAACAACCAGTTAGCAGGCACAATAGACGTCCTCGCGAATCTTCCCCTTGAAAATCTAAATATTGCAAATAATCGGTTTACTGGCTGGATTCCTGATCAACTGAAGAGTATCAATTTACAGAAGGATGGTAACTCTTTTAGTTCTGGGCCCGCACCGCCACCTCCTCCCGGTACACCTCCGGCTACCAAAAACAACCCTAATAGAAACTCTGGCAGTAATAACAACCCATCAAGCAGTGGTGGAGGTAAATCTGGAATAGGGGGTGGTGCAATCGCTGGAATTGTAATATCCTTACTTGTAGTTGGAGCTTTAGTAGCATTCTTTCTTGTCAAGAGACGATCCCGGAAATCAGCCCCTGATGTCGAAAAGCTTAATCCCAACCCGCCTTTCACACCTCAGGTTCCAGATGAAGTACAAGAAATGAAGCTGTTACAGACGTCTTCTGCGTTCAACACTAAGACATTTGATACTAATGCTGCAATTAATCTTAAACCCCCACCTGTGGATCGTCACAAGTCATTTGATGAGGATGATATTTCTAGCAAACCTATTGTTGTCAAGAAAAAGGCTGTCACCGCTCCTATTAATGTGAAATCATATTCGATAGCCGACCTCCAGATGGCAACCGGCAGCTTCAGTGTAGACAACTTTCTGGGTGAGGGTTCCTTTGGACGTGTTTATCGAGCTCAGTTTGATGATGGAAAGGTTCTGGCCGTGAAGAAAATAGATTTGTTGGCCCTTACCAGTGACTTATTTGAAGATTTCACAGAGATTGTATCAAGTATCTCCCAATTGCATCACCCAAACGTGACAGAATTGATGGGATATTGCTCAGAGCATGGACAACATCTACTGGTGTATGAATTCCACAAAAATGGCTCCCTCCATGACTTCTTACATTTATCAGATGAATACAGCAAGCCACTGACATGGAATTCTCGTGTCAAAATTGCTTTGGGAACTGCACGTGCTTTAGAGTATCTACATGAAGTTTCGTGTCCATCAATTGTTCATAAAAATATAAGGTCAGCCAACATTTTACTTGATGGAGAACTCAATCCTCACCTTTCCGACTCTGGTCTGGCAAGCTTTGTGGAAAATCTCAATCAAGGATTGGATGCGGGGTCAGGATATAGTGCCCCTGAGGTTACCATGTCGAGTCAGTATACTCTAAAAAGCGACGTTTATAGCTTTGGAGTAGTCATGTTGGAGCTTCTCAGTGGGCGAAAACCATTTGACAGTTCAAGGCCAAGGACAGAACAATCATTGGTTAGGTGGGCCACACCCCAGCTGCACGACATTGATGCTTTGGCCAAGATGGTTGACCCGGCACTCAAAGGGCTCTACCCTGTAAAATCGCTCTCCCGATTTGCCGATGTTATCGCACTTTGCGTGCAGCCTGAGCCAGAGTTTCGACCACCAATGTCGGAAGTAGTCCAGGCCCTAGTCCGGCTTGTGCAAAGAACAAATATGAGTAAGAGAACTATTGGAAGTGATCAAGGATTATCCCCAAGAACTGGAAACCTGGATGAGGAATCTACCTTTTAA 2076 44.22 MMKNWNWKGIFVLINLCILGWKPSSVNGDTDPTDASALKTLYSSLNSPTQLTQWSSTGDDPCGQSWKGVTCAGSRVTEIVISGLGLSGSLGYQLTSLTSLTNLDVSNNNLGGGITYQLPPNLLQLNLARNNLNGGIPYSISQMTSLKYLDLSYNSLPGNLPSTFSSLSSMNTMYLENNQLAGTIDVLANLPLENLNIANNRFTGWIPDQLKSINLQKDGNSFSSGPAPPPPPGTPPATKNNPNRNSGSNNNPSSSGGGKSGIGGGAIAGIVISLLVVGALVAFFLVKRRSRKSAPDVEKLNPNPPFTPQVPDEVQEMKLLQTSSAFNTKTFDTNAAINLKPPPVDRHKSFDEDDISSKPIVVKKKAVTAPINVKSYSIADLQMATGSFSVDNFLGEGSFGRVYRAQFDDGKVLAVKKIDLLALTSDLFEDFTEIVSSISQLHHPNVTELMGYCSEHGQHLLVYEFHKNGSLHDFLHLSDEYSKPLTWNSRVKIALGTARALEYLHEVSCPSIVHKNIRSANILLDGELNPHLSDSGLASFVENLNQGLDAGSGYSAPEVTMSSQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRTEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTIGSDQGLSPRTGNLDEESTF 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6173636 6180087 + Conep07aG0085600.1 Cone7ag0827 441423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0827 691 MobiDBLite consensus disorder prediction 224 238 - -
Cone7ag0827 691 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515(InterPro)
Cone7ag0827 691 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 665 IPR046959 -
Cone7ag0827 691 MobiDBLite consensus disorder prediction 216 259 - -
Cone7ag0827 691 MobiDBLite consensus disorder prediction 670 691 - -
Cone7ag0827 691 Gene3D Ribonuclease Inhibitor 31 249 IPR032675 -
Cone7ag0827 691 Pfam Protein tyrosine and serine/threonine kinase 390 658 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0827 691 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 156 - -
Cone7ag0827 691 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cone7ag0827 691 Gene3D Phosphorylase Kinase; domain 1 353 465 - -
Cone7ag0827 691 SUPERFAMILY L domain-like 31 211 - -
Cone7ag0827 691 ProSiteProfiles Protein kinase domain profile. 388 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0827 691 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 351 465 - -
Cone7ag0827 691 ProSitePatterns Protein kinases ATP-binding region signature. 394 417 IPR017441 GO:0005524(InterPro)
Cone7ag0827 691 SUPERFAMILY Protein kinase-like (PK-like) 370 658 IPR011009 -
Cone7ag0827 691 MobiDBLite consensus disorder prediction 239 258 - -
Cone7ag0827 691 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515(InterPro)
Cone7ag0827 691 Gene3D Transferase(Phosphotransferase) domain 1 467 678 - -
Cone7ag0827 691 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 466 672 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0827 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0853 Cone-Chr4:5700963 Cone7ag0827 Cone-Chr7:6173636 0 dispersed
Cone4ag0869 Cone-Chr4:6042321 Cone7ag0827 Cone-Chr7:6173636 2.76E-176 dispersed
Cone5ag1846 Cone-Chr5:12958518 Cone7ag0827 Cone-Chr7:6173636 1.32E-165 dispersed
Cone7ag0806 Cone-Chr7:5899040 Cone7ag0827 Cone-Chr7:6173636 5.50E-39 dispersed
Cone7ag0827 Cone-Chr7:6173636 Cone9ag1056 Cone-Chr9:5752906 4.97E-126 dispersed
Cone17ag0031 Cone-Chr17:205759 Cone7ag0827 Cone-Chr7:6173636 2.19E-237 wgd
Cone20ag1372 Cone-Chr20:8777652 Cone7ag0827 Cone-Chr7:6173636 5.34E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83030 PF14432 DYW_deaminase 3.30E-35 CL0109 Cone PK