Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0835 ATGATGTTTCCTTCCCAAGGATCTTCTAGGCACACTTGTAGTCTTCTTGCTGTCACTTGTGGAAGTTTAACCGAAGATAAGCGTAAGAAGGATGTTGTTGATGATCAGCCGAGATATCCCTTTCCAGAATTGGCTTCGTCAGGCCGTTTGGAGGTTCAGGTTCTGACAAGTCCAAGCAAAGATGAATTTGGTAGAGTTGTGGAATCATATCAACCAAACTTTGTGTATTTGCAAGGAGTGCAACTTGAGAATGGTGAAGTGGGGTCTTTAGTTTGGGGAGATGTTGATTTTTCGTCTGTAGATGCTATATGTGATCTGTTTTGTACACCTTTGCCTACCACTGTTTATTTGGAAATTCCAAATGGAGAGGAATTGGCTGAGGCACTTCACTTCAAGGGAATTCCTTATGTGATATATTGGAAGAGCACATTTTCTTGTTATGCTGCCTGCCATTTCCGTAATGCATTGCTTTTGGTGGTTCAAAGCTCATCTACTCATACATGGGATGCATTTCAACTTGCACATGCTTCCTTTAGGCTTTACTGTTTGCAAGGCAAAGATGTTCTTCCTAGAAATTCCGATCGAGGAAGGCTTGAGCAGGGCCCACATCTTCTTGGGGAGCGGTCAAAGATACATGTAGAACTCCCTGAAATAGATCCAGGTGAAGATGAAGATAGCTCTCTAGGTGCACTTCCTGCCGTAAATATTCACGACGAAGAAGTGAACATGAGGTTTCTTATATGTGGAGTGCCCTCTACATTGGATTCATTGCTACTTGAATCTCTGGAAGATGGTCTCACTGCCCTCTTGGACATTGAAGTGCGTGGGGGCAAGCTTCACGGAAAGTTCAGTGCCCCTCCACCCCCTCTTCAGGCAGGGACATTTTCTCGTGGTGTTGTGACTATGAGATGTGATATATCGACCTCTAGTTCGGCTCACATTTCACTTCTTGTCTCAGGTAGTGCACAAACTTGTTTTGATGATCAGCTATTGGAAAATCATATTAAAAATGAAATTATTGAAAAGTGCCAACTAGTTCATGCAATTTCTAATTCTAATGGAAACAAACTTCCTTTGTCCGAGCCTCGAAGATCCACTGCAATTGCTTGTGGGGCCACAGTATTTGAAGTTTGCATGAAGGTGCCTCAATGGGCTTCACAGGTGTTGAGGCAACTTGCCCCAGATCTTTCATACCGTAGCTTGGTAGCACTTGGAATAGCAAGCATTCAAGGATTGCCTGTTGCTTCCTTTGAGAAAGATGATACTGAGCGCCTCCTTTTCTTCTGTTCAAGTCAGCAAAAAGATGTATATTCCGATAATTTGATTCTTAGAAACAGCCCAAGCTGGTTAAAGCCGCCTGCTCCTAGCAGAAAGAGGTCTGAACTGAGCCAAGGACCTATCCCCAGTTCTCTTAATGGTATTGAATATTCAAATACTCTTTCCACTAGAAGAATAGATGAAGAGAACAAAGAGACTCCATTGACTAATGGCTTCAAGACACCTTTACCTCCGGCCAGGCAAAGATTGAAAATAGCTGCCATGAGACCTATTCCTCATGTTCATCGTCATAAAATGACACCCTTCTCAGGATTGCCCCTGGCAGAAGGGCATGATGGAGGTCAAGTTAAGGCTATGGTACCTGTCGTGACTCCTGTAAAGCACATTGTTATGGGGTCCACCTCTTCAACTCATCGAAAATCTTTCTCAAGCTCATCTCAGTCCAAGCAGATTATCTCCTTGAACCCATTACCTTTGAAGAAACATGGTTGTGGCAGAAGCCAAATACAGGCTTGTTCTGAGGAAGAGTTTTTGAAGGATGTGATGCAGTTTCTAATTCTTCGAGGACATAATCGGCTCATTCCTCGAGGTGGGCTTGCAGAGTTTCCAGATGCCATACTTAATGGGAAGCGTCTTGACTTGTACAACTTGTACAAAGAGGTGGTCACGAGAGGGGGCTTTCATGTTGGGAATGGCATTAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTATACCATGACAAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTATCTTCTAGAATATGAATTGGCCCATGATGATGTAGATGGGGAGTGTTGTTTGCTATGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGGATTTGCGGTGAGTGGGCCCACTTTGGCTGTGACAGACGGCAGGGTTTAGGTGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATGTATGTCCGCCCTGTAGCATTACGAGTTCAAAGAAAAAATCGCAAAAAATCACAAATGGGTATCCTCAAGGCTTAATAGCTTCAAGAGCATTGTGA 2355 43.4 MMFPSQGSSRHTCSLLAVTCGSLTEDKRKKDVVDDQPRYPFPELASSGRLEVQVLTSPSKDEFGRVVESYQPNFVYLQGVQLENGEVGSLVWGDVDFSSVDAICDLFCTPLPTTVYLEIPNGEELAEALHFKGIPYVIYWKSTFSCYAACHFRNALLLVVQSSSTHTWDAFQLAHASFRLYCLQGKDVLPRNSDRGRLEQGPHLLGERSKIHVELPEIDPGEDEDSSLGALPAVNIHDEEVNMRFLICGVPSTLDSLLLESLEDGLTALLDIEVRGGKLHGKFSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSAQTCFDDQLLENHIKNEIIEKCQLVHAISNSNGNKLPLSEPRRSTAIACGATVFEVCMKVPQWASQVLRQLAPDLSYRSLVALGIASIQGLPVASFEKDDTERLLFFCSSQQKDVYSDNLILRNSPSWLKPPAPSRKRSELSQGPIPSSLNGIEYSNTLSTRRIDEENKETPLTNGFKTPLPPARQRLKIAAMRPIPHVHRHKMTPFSGLPLAEGHDGGQVKAMVPVVTPVKHIVMGSTSSTHRKSFSSSSQSKQIISLNPLPLKKHGCGRSQIQACSEEEFLKDVMQFLILRGHNRLIPRGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPPCSITSSKKKSQKITNGYPQGLIASRAL 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6286278 6294018 + Conep07aG0086400.1 Cone7ag0835 441431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0835 784 MobiDBLite consensus disorder prediction 462 480 - -
Cone7ag0835 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 780 IPR042293 -
Cone7ag0835 784 SUPERFAMILY FYVE/PHD zinc finger 693 762 IPR011011 -
Cone7ag0835 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Cone7ag0835 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 765 IPR013083 -
Cone7ag0835 784 MobiDBLite consensus disorder prediction 448 480 - -
Cone7ag0835 784 SMART ARID_2 594 697 - -
Cone7ag0835 784 CDD ARID 599 697 - -
Cone7ag0835 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Cone7ag0835 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677(InterPro)
Cone7ag0835 784 Gene3D - 592 700 IPR036431 GO:0003677(InterPro)
Cone7ag0835 784 CDD PHD_ARID4_like 707 758 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0835 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0844 Cone-Chr4:5560215 Cone7ag0835 Cone-Chr7:6286278 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46502 PF02230 Abhydrolase_2 2.20E-39 CL0028 Cone TR