Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0848 ATGGCACCCAGTTTAGACTCTGCATTTTCAAGCCTTTTATGCGCGGAAGAGAACGACGCCGTTTTCGGCGATACCAACAACAATGAAGATTATTGGAAAGTAGTAGCGGAGTTTGAGGAGGAAGATAGATATGAGAAAAATCGGCGTCTTCCTGGCCGTCGATATGGTGGTGACAAGGAATATGATTTATCATTGCCGTTGCTTAGTGATGAATGTGTGGCTTTAATGGTGGAGATCGAATCCCAGCATTTTCCAAATTCTAATTACTTGGAGAGATTGAGAAATGGAGACTTGGACCTTGCAGCTAGAAAAGAGGCTGTTGACTGGATTTCAAAGGTCAAAGATCATTTTAGCTTTGGGCCTCTCTGTGCCTACTTGGCCATTAGCTACTTGGATCGATTCTTTTCAACCTATGAATTACCTAAAGGAAAAGCTTGGACAATGCAATTATTGGCAGTGGCCTGTTTATCTCTTGCAGCCAAATTGGAGGAAACTCAAGTCCCGCTCTCGCTCGATTTGCAGGTGGGTGATTCGAAATTTGTGTTTGAAGCTCGGACTATAGAAAGAATGGAGCTTCTGGTTTTGAGCACATTAAGGTGGAGAATGCAAGCAATTACTCCTTTCTCCTTCATAGATAGTTTCATTTGCAAGATTAACAGCGATCAAATCCTGCCTCGAGTTTCCATTTCACAATCGATTCAACTAATCTTATGCATAATACAAGAAATTGACTTCTTGGAGTTCAGACCATCAGTAATTGCAGCAGCAGTGGCAATCTCTGTTACGGGCAACACTGCAATGCTGGACTTTGAGAAAGCATTTTCTCTTCTCCCTCAACATGTTGAAAAGGAGAGAGTGGTGAAATGTATTAAATTGATTCAAGACTCTTCATTAATCGGTAACTACGTAAAGAATGCAAGAGCTTCAATCCCATCTATACCTCGTAGTCCCAGCCGGGTGTTAGATCTTGCTTGCTTAAGCTACAAAAGCGACGACACAACGACCGGTTCTTGTGTAAATTCTACTAATAATAATCGCAATAATAGCCCACATCCTAGTACCAAAAGGAGGCTAAATCGACCCTGGGAGGTTGAACTATAA 1101 41.87 MAPSLDSAFSSLLCAEENDAVFGDTNNNEDYWKVVAEFEEEDRYEKNRRLPGRRYGGDKEYDLSLPLLSDECVALMVEIESQHFPNSNYLERLRNGDLDLAARKEAVDWISKVKDHFSFGPLCAYLAISYLDRFFSTYELPKGKAWTMQLLAVACLSLAAKLEETQVPLSLDLQVGDSKFVFEARTIERMELLVLSTLRWRMQAITPFSFIDSFICKINSDQILPRVSISQSIQLILCIIQEIDFLEFRPSVIAAAVAISVTGNTAMLDFEKAFSLLPQHVEKERVVKCIKLIQDSSLIGNYVKNARASIPSIPRSPSRVLDLACLSYKSDDTTTGSCVNSTNNNRNNSPHPSTKRRLNRPWEVEL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6444069 6446764 - Conep07aG0087700.1 Cone7ag0848 441444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0848 366 Gene3D - 76 290 - -
Cone7ag0848 366 SMART cyclin_7 108 196 IPR013763 -
Cone7ag0848 366 MobiDBLite consensus disorder prediction 332 355 - -
Cone7ag0848 366 SMART Cyclin_C_2 205 316 IPR004367 -
Cone7ag0848 366 Pfam Cyclin, C-terminal domain 205 297 IPR004367 -
Cone7ag0848 366 Gene3D - 86 203 - -
Cone7ag0848 366 CDD CYCLIN_AtCycD-like_rpt1 102 200 - -
Cone7ag0848 366 SUPERFAMILY Cyclin-like 67 202 IPR036915 -
Cone7ag0848 366 CDD CYCLIN_AtCycD-like_rpt2 205 293 - -
Cone7ag0848 366 MobiDBLite consensus disorder prediction 332 366 - -
Cone7ag0848 366 FunFam D6-type cyclin 200 291 - -
Cone7ag0848 366 ProSitePatterns Cyclins signature. 103 134 IPR048258 -
Cone7ag0848 366 PANTHER CYCLINS 68 291 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone7ag0848 366 Pfam Cyclin, N-terminal domain 73 202 IPR006671 -
Cone7ag0848 366 SUPERFAMILY Cyclin-like 188 294 IPR036915 -
Cone7ag0848 366 FunFam D2/4-type cyclin 86 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1311 Cone-Chr10:10248588 Cone7ag0848 Cone-Chr7:6444069 1.34E-41 dispersed
Cone6ag1456 Cone-Chr6:11644740 Cone7ag0848 Cone-Chr7:6444069 2.95E-41 dispersed
Cone7ag0848 Cone-Chr7:6444069 Cone7ag1351 Cone-Chr7:9821020 9.21E-47 dispersed
Cone10ag0325 Cone-Chr10:1532544 Cone7ag0848 Cone-Chr7:6444069 1.49E-26 transposed
Cone17ag1189 Cone-Chr17:8708758 Cone7ag0848 Cone-Chr7:6444069 1.45E-120 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone7ag0848 Cone-Chr7:6444069 4.40E-125 wgd
Cone4ag1308 Cone-Chr4:10767744 Cone7ag0848 Cone-Chr7:6444069 3.31E-227 wgd
Cone6ag1538 Cone-Chr6:12087182 Cone7ag0848 Cone-Chr7:6444069 2.42E-93 wgd
Cone7ag0848 Cone-Chr7:6444069 Cone9ag1454 Cone-Chr9:10785867 2.39E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0848 K18810 - rcu:8268388 400.208